Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso20g1255 ATGGGAAATTCGTTCGGATGTTCGGCCTCCGGCGAAAGGCTGGTGTCGGCGGCGAGGGACGGCGACTTGGTGGAAGCGAAGATGCTTCTGAACTGCAACCCGTGTCTCGCCAAGTATTCTACTTTCGGTGGCCTCAATTCCCCTCTCCATTTTGCAGCTGCCAAAGGCCACAACGAGATTGTGGCATTGTTGCTGGAGAATGGAGCTGATGTGAATTCCAGAAATTATTGTGGCCAGACCGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGCACAGACACTTTTACTCTTCAGATGCAATGTTATAAGAGCTGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTGCATGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTACCAAGTGCACCTTATCAAGCTATACATGCTGGCACAGCTGTTGACAGGGGTGGTGGATCAAATGTGAAAGGCAAACATGAGCATAGTGCCCTTTCCAAGTTTGTAAATAAGACTGCTGATGGAGGAATCACTGCCCTTCATATGGCTGCGTTAAATGGGTACTTTGATTGTGTACAACTGCTGCTTGATCTTAATGCAAATGTGAATGCTGTGACATATAATTATGGCACATCAATGGATTTAATAGGGGCTGGAAGTACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGTTGTCAGATCCTTGTTGCACACGGTGCAAGTCGGCTGGCTTTAAATTGCAATGGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCACAATGCCTACATTCTCTCATTCAAATTACTTGTCCTTGCCCCTTATGAGTGTGCTCAACATAGCTAGAGAGTATGGATTGCAATCATCTACAGCCTCCTCTGATGAGATTGACTTTTGTGCTGTATGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAACAATGTTTCTTCTGAAATGGTTGGCCCTCCTGGCTCTATCCCTTGCCCCCTATGTAGACATGGAGTTGTCTCTTTTGTTAAGTTGCCAGGTTCCCAAGCAAAAGAAAATAAACTACATGTGTCTCTTGGCCTGTGTACCCCATGCATGCTACATCCACGTGACCTAGACAAGCCATCCCTTTCTCATACACCAGAGGTTGGAAGAAATCGTGTAGCTTCTGTTCCTTCGGAGATACTCTGCCCCGTCACTTGTAGTCCATTTCCATCTATGGCAATTCCCTTATGTACCTGCAATGATGGTCCATGTCCATCATTTGAACCCAGAGAAGTAGAAACACAGGATGGATTACCTCATCACTCTCAAGCATCAACAGTGGATCAGGATAAAATTGAAGGGCCAAGACTAGATAAAACAACCTGCTCTAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAAATAAATGCTTGA 1539 0.4594 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVAQTLLLFRCNVIRADYLSGRTALHFAAVHGHVRCIRLVVADFVPSAPYQAIHAGTAVDRGGGSNVKGKHEHSALSKFVNKTADGGITALHMAALNGYFDCVQLLLDLNANVNAVTYNYGTSMDLIGAGSTPLHYAACGGNLKCCQILVAHGASRLALNCNGWLPLDIARMWGRHWLEQLLAPSSDATMPTFSHSNYLSLPLMSVLNIAREYGLQSSTASSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMVGPPGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDLDKPSLSHTPEVGRNRVASVPSEILCPVTCSPFPSMAIPLCTCNDGPCPSFEPREVETQDGLPHHSQASTVDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso20g1255 512 PANTHER HOMEOBOX PROTEIN WARIAI 1 512 - -
Gso20g1255 512 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Gso20g1255 512 MobiDBLite consensus disorder prediction 458 484 - -
Gso20g1255 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Gso20g1255 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Gso20g1255 512 Pfam Ankyrin repeats (3 copies) 215 278 IPR002110 GO:0005515
Gso20g1255 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 391 IPR013083 -
Gso20g1255 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Gso20g1255 512 SUPERFAMILY RING/U-box 313 375 - -
Gso20g1255 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Gso20g1255 512 Gene3D - 6 140 IPR036770 -
Gso20g1255 512 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 512 - -
Gso20g1255 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Gso20g1255 512 SUPERFAMILY Ankyrin repeat 14 274 IPR036770 -
Gso20g1255 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Gso20g1255 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Gso20g1255 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Gso20g1255 512 Gene3D - 156 300 IPR036770 -
Gso20g1255 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Gso20g1255 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Gso20g1255 512 SMART ANK_2a 111 141 IPR002110 GO:0005515
Gso20g1255 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Gso20g1255 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Gso20g1255 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Gso20g1255 512 Pfam Ankyrin repeat 178 208 IPR002110 GO:0005515
Gso20g1255 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Gso20g1255 512 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Gso20g1255 512 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso20g1255 Gso-Chr20 42623965 42628936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso20g1255 14 280 Miscellaneous Gene Families AT2G31820 27.778 2.94e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso20g1255 K19044 - gmx:100785638 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1255 20 42623965 42628936 Gso10g2122 10 48216293 48221143 GST
Gso16g1573 16 36263405 36271652 Gso20g1255 20 42623965 42628936 PCT
Gso9g1184 9 34064041 34071355 Gso20g1255 20 42623965 42628936 PCT
Gso20g1255 20 42623965 42628936 Gso16g1573 16 36263405 36271652 PCT
Gso20g1255 20 42623965 42628936 Gso9g1184 9 34064041 34071355 PCT