Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1573 ATGGGGAATTCATTTGGGTGTTCGGCTTCCGGCGAGAGGTTGGTGTCGGCGGCGAGGGACGGCGATTTGGTTGAGGCGAAGATGCTTCTGGAATGCAACCCTTGTCTTGCAAAGTACTCAACTTTCGGGGGTCTCAATTCCCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTGGCATTGTTGCTTGAAAATGGAGCTGATGTGAATTCGAGAAATTACTGTGGGCAGACTGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTGCAGACCCTTCTGCTCTTCAGATGCAATGTTGTGAAAGCAGATTATCTCAGCGGTAGGACAGCTCTTCACTTTGCAGCCATCAATGGGCATGCAAGATGCATTAGGCTTGTCTTGGTAGATTTTGTTCCAAGTGCTCCTTTTGAAGCTTTACATGCTCGCATAGATGCTGAGGGTGATGGATCAAATGTGAAAAACAAACATGAACAAAGTGTGCTGTCCAAGTTTGTAAACAAAACAGCTGATGCTGGTATTACTGCCCTTCATATGGCTGCATTAAATGGGCACTTTGATTGTGTACAACTGCTACTTGATCTTAATGCAAATGTGTCAGCTGCGACATTTCATTATGGTACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCAAGTCGGATGGCTTTGAACTGCAATGGATGGCTTCCACTTGATGTTGCTCGGATGTGGGGGCGTCATTGGCTTGAACCATTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCAAATTATTTATCCTTGCCTCTCATGAGTGTGCTCAACATTGCCAGAGAGTGTGGACTGCAATCAACTACAACCTCCTCTAACGAAGTTGATGTTTGTGCTGTTTGCCTGGAGAGGCAATGTTCAGTGGCTGCAGAAGGATGTGGGCATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGCTCAACAAGCAATGTTTCTTCGGAGACGTGTGGGCCTCCTGGCTCTATCCCTTGTCCCCTTTGTAGACATGGAATTATCTCTTTTGTCAAATTACCAGGTTCCCAAGCAAAAGAAAATAAATTACACGTGTCCCTCAGCCTGTGTACCCCATGCATGCTACATCCATGTGACCTAGATCGACCGACTGTTTCTCATACCCCTGAGATTCGAAGAAACCGTGTAGCTTCTGTTCCATCGGAGATGCTTTGCCCTGTCACTTGCACTCCATTTCCATCTGTAGCAATTCCTCTGTGTACATGCAACAATGGTCCTTGTCCATCATTTGAACCCCGGGAAGCAGAAGCACAAGGTGGATCGCCTCTCCACTCGCATGCTTCGATGATGGATCAGGATAAAATGGATGGTCCGAGGCTGGAGAAAACAACATGCTCAGGCATGTTTTGGGGTAGAAGAAGTTGCAGTCGGGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1536 0.4603 MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVVKADYLSGRTALHFAAINGHARCIRLVLVDFVPSAPFEALHARIDAEGDGSNVKNKHEQSVLSKFVNKTADAGITALHMAALNGHFDCVQLLLDLNANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDVARMWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNIARECGLQSTTTSSNEVDVCAVCLERQCSVAAEGCGHELCVRCALYLCSTSNVSSETCGPPGSIPCPLCRHGIISFVKLPGSQAKENKLHVSLSLCTPCMLHPCDLDRPTVSHTPEIRRNRVASVPSEMLCPVTCTPFPSVAIPLCTCNNGPCPSFEPREAEAQGGSPLHSHASMMDQDKMDGPRLEKTTCSGMFWGRRSCSREHQCNSEINA* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1573 511 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Gso16g1573 511 SUPERFAMILY RING/U-box 317 374 - -
Gso16g1573 511 MobiDBLite consensus disorder prediction 457 482 - -
Gso16g1573 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 511 - -
Gso16g1573 511 Gene3D - 108 218 IPR036770 -
Gso16g1573 511 Pfam Ankyrin repeat 112 131 IPR002110 GO:0005515
Gso16g1573 511 Gene3D - 8 107 IPR036770 -
Gso16g1573 511 ProSiteProfiles Zinc finger RING-type profile. 318 368 IPR001841 -
Gso16g1573 511 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
Gso16g1573 511 ProSiteProfiles Ankyrin repeat region circular profile. 219 245 - -
Gso16g1573 511 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Gso16g1573 511 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Gso16g1573 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 390 IPR013083 -
Gso16g1573 511 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Gso16g1573 511 ProSiteProfiles Ankyrin repeat region circular profile. 176 205 - -
Gso16g1573 511 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Gso16g1573 511 PRINTS Ankyrin repeat signature 192 206 IPR002110 GO:0005515
Gso16g1573 511 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Gso16g1573 511 Pfam Ankyrin repeats (many copies) 219 260 IPR002110 GO:0005515
Gso16g1573 511 Pfam Ankyrin repeats (many copies) 171 216 IPR002110 GO:0005515
Gso16g1573 511 ProSitePatterns Zinc finger RING-type signature. 333 342 IPR017907 -
Gso16g1573 511 SUPERFAMILY Ankyrin repeat 15 273 IPR036770 -
Gso16g1573 511 SMART ANK_2a 77 106 IPR002110 GO:0005515
Gso16g1573 511 SMART ANK_2a 44 73 IPR002110 GO:0005515
Gso16g1573 511 SMART ANK_2a 176 205 IPR002110 GO:0005515
Gso16g1573 511 SMART ANK_2a 219 248 IPR002110 GO:0005515
Gso16g1573 511 SMART ANK_2a 111 142 IPR002110 GO:0005515
Gso16g1573 511 PANTHER HOMEOBOX PROTEIN WARIAI 1 511 - -
Gso16g1573 511 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Gso16g1573 511 Gene3D - 220 273 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1573 Gso-Chr16 36263405 36271652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1573 17 272 Miscellaneous Gene Families AT5G02620 27.907 1.96e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1573 K19044 - gmx:100812809 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1573 16 36263405 36271652 Gso9g1184 9 34064041 34071355 GST
Gso16g1573 16 36263405 36271652 Gso20g1255 20 42623965 42628936 PCT
Gso16g1573 16 36263405 36271652 Gso10g2122 10 48216293 48221143 PCT
Gso20g1255 20 42623965 42628936 Gso16g1573 16 36263405 36271652 PCT
Gso10g2122 10 48216293 48221143 Gso16g1573 16 36263405 36271652 PCT