Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1088 ATGATTATCATCTCTGCAGTTGGAACTTATAACACTATCACGGATAAGAGTGATGTGTATAGCTTTTGGGTTGTGCTTATTGAGCTGATATCATCCATGCCAGTAGTTTTAGCAGCCAGGGAAAGAGATGAGGTTAACTTGGCAAATATTGTGATAAAAAAGATTCAAAAAAGAAAGCTTAGTGAGCTTGTAGACCCATCCTATGGGTTTGAGTCAAACCAACCAGCTTCATCCAGCAAAACATCTCTAATCTTAACTGCATTCACTGCAGGACAAGCTGCTACCTTTAAAATGTTTGAAACGATTAAGAGGCAGCCAGATATTGATGCTTATGACACTGGTGGTCGACTGTTAGATGATATTTCTGGAGATATAGAGCTTAAGAAGGTCTGCTTTAGTTATACTTCTAGACCTGATAAGCAAATATTCAATGGATTTTCAATTTCAATACCAAGTGGCACTACTGCAGCTTTGAATATTGCCTATGGTAAAAATGGCCCAACAGATGAAGAAATCGGAGCTGCAGCTGAACTTGCTAATGTTGCTAAGTTCATAGATAAATTTCTCCATGTTGTTGGGGTTATCTTCACAGTTTTGTTATTGGGATTACAAGGAGTTAGGGTTGTTGAATGCAGAGTAGCCAATGGATTGGACTGTTTTGAGTACCCTGCTATCAGCTGCAGAAAACACAGTGCAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGAAAAACATCTAACACCAAAGCTTTTCAATATGCAATTAGCAATCTCAGCCATTATGCATCTGATGGTGGAGCTCTACTTGTTGTGCCACCAGGGAAATGGCTAACAGGAAGCTTCAATCTCACAAGCCACTTCACACTTTTTCTCCAAAAGGAAGCTACCATTCTTGGATCTCAGGATGAATCAGAGTGGCCCACCCTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAGTAATCACTGGTTACAATGGAACAATTGATGGACAAGGGTCTTATTGGTGGGACAAGTTCCACAAGGGTGAATTGAAACTCACCAGGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCAAATCTCACTTTGATCGATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGTGACATTATAATTCAAGGGTTGACCATTCTTGCCCCAGTTGACTCTCCCAACACTGATGGAATAAATCCAGATTCTTGTTCCAACACTAGGATTGAAGATTGCTACATTGTCTCCGGTGATGATTGTGTAGCAATAAAAAGTGGTTGGGATGAGTCTGGAATCAAATTTGGAATGCCAAGCCAACACATAATAATCAGAAGGCTTGAATGTGTGTCCCCAGATAGTGCCATGATTGCCTTAGGAAGTGAAATGTCTGGTGGAATCCGAGATGTTAGAGCTGAAGAACTCACAGCTCTCAACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCTTATGTGAGGGACATATTTGTCAAAGGAATGAACTTAAACACCATGAAGTATGTGTTTTGGATGACAGGTTCTTATGGCTCACACCCTAACACCGATTTTGATCCCAAAGCACTTCCCAACATTACAGGAATAAACTACAGAGATGTCATTGCAGATAATGTCACATATTCAGCAAGACTTGAAGGGATTGCTAATGATCCTTTTACGGGAATCTGTATTTCTAATGTGACTATCCATAGTGGAAAAAAGAAACCGCAATGGAATTGCACTGACATTGAGGGGGTTACAAGCAATGTCTATCCTAAGCCTTGTGAGTTGCTGCCTCTGAAAGAGAAAATTGAGTGTCCTTATCCAGATGACAAATTGCCCATTGAAAGTGTGCAGCTGAAGACTTGTTCCTTTAAAAGTGTCTCATTCTTCTGA 1968 0.4055 MIIISAVGTYNTITDKSDVYSFWVVLIELISSMPVVLAARERDEVNLANIVIKKIQKRKLSELVDPSYGFESNQPASSSKTSLILTAFTAGQAATFKMFETIKRQPDIDAYDTGGRLLDDISGDIELKKVCFSYTSRPDKQIFNGFSISIPSGTTAALNIAYGKNGPTDEEIGAAAELANVAKFIDKFLHVVGVIFTVLLLGLQGVRVVECRVANGLDCFEYPAISCRKHSAVLTDFGGVGDGKTSNTKAFQYAISNLSHYASDGGALLVVPPGKWLTGSFNLTSHFTLFLQKEATILGSQDESEWPTLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGYNGTIDGQGSYWWDKFHKGELKLTRPYMIEIMFSDHIQISNLTLIDSPSWFVHPIYSSDIIIQGLTILAPVDSPNTDGINPDSCSNTRIEDCYIVSGDDCVAIKSGWDESGIKFGMPSQHIIIRRLECVSPDSAMIALGSEMSGGIRDVRAEELTALNTQSAVRIKTAVGRGAYVRDIFVKGMNLNTMKYVFWMTGSYGSHPNTDFDPKALPNITGINYRDVIADNVTYSARLEGIANDPFTGICISNVTIHSGKKKPQWNCTDIEGVTSNVYPKPCELLPLKEKIECPYPDDKLPIESVQLKTCSFKSVSFF* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1088 655 SUPERFAMILY Pectin lyase-like 226 633 IPR011050 -
Gso9g1088 655 Pfam Pectate lyase superfamily protein 235 290 IPR024535 -
Gso9g1088 655 Gene3D ABC transporter type 1, transmembrane domain 82 114 IPR036640 GO:0005524|GO:0016021
Gso9g1088 655 Gene3D - 115 158 IPR027417 -
Gso9g1088 655 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 196 648 - -
Gso9g1088 655 PANTHER PECTIN LYASE-RELATED 196 648 - -
Gso9g1088 655 Gene3D - 205 617 IPR012334 -
Gso9g1088 655 Pfam Glycosyl hydrolases family 28 327 608 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1088 Gso-Chr9 31201286 31210924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g1088 212 650 Glycoside Hydrolase AT3G61490 67.333 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1088 - - gmx:100812836 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1471 16 34893162 34896408 Gso9g1088 9 31201286 31210924 GST
Gso9g1088 9 31201286 31210924 Gso10g2065 10 47633488 47636279 PCT
Gso10g2065 10 47633488 47636279 Gso9g1088 9 31201286 31210924 PCT