Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1471 ATGAAGCCGTGTCCAAAACTCAGTAACTCCTGTGTTGTGGGGGTTATCTACACAGTTTTGTTATTGGGATTACAAGGAGTGAGGGTTGTTGAATGCAGAGTGGCCAATGGATTGGACTGTTTTGAGTACCCTGCTATCAGCTGCAGAAAACACAGTGCAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGAAAAACATCTAACACAAAGGCCTTTCAATATGCAATTAGCAATCTCAGCCATTATGCATCTGATGGTGGAGCTCTCCTTGTTGTGCCACCAGGGAAATGGTTAACAGGAAGTTTCAATCTCACCAGCCATTTCACACTTTTTCTCCAAAAGGAAGCTACCATTCTTGGATCTCAGGATGAATCAGAGTGGCCCACACTTCCTGTGCTACCATCATATGGCAGAGGAAGGGATGCTCCTGATGGAAGGCTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTAATAATCACTGGTTACAATGGGACAATTGATGGACAAGGGTGTTATTGGTGGGACAAGTTCCACAAGGGTGAATTGAAACTCACCAGGCCTTACATGATTGAGATTATGTTCTCTGATCACATCCAGATATCTAATCTCACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACACAAGTGACATTATAATTCAAGGGCTGACCATTCTTGCTCCAGTTGACTCTCCAAACACTGATGGAATAGATCCAGATTCTTGTTCCAACATTAGGATTGAAGATTGCTACATAGTCTCCGGTGATGATTGTGTAGCAATAAAAAGTGGTTGGGATGAGTATGGAATCAAATTTGGAATGCCAAGCCAACACATAATCATTAGAAGGCTTGAATGTGTATCCCCAGATAGTGCTATGATTGCTTTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCTGAAGACCTCACAGCCATCAACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGCAGAGGAGCATATGTGAGAGACATATTTATCAAAGGAATGAACTTAAACACCATGAAGTATGTGTTTTGGATGACAGGTTCTTATAGCTCACACCCTGACAATGGCTTTGATCCAAAAGCACTTCCCAACATTACTGGAATAAACTATAGAGATGTCATTGCAGAGAATGTCACATATTCAGCAAGACTTGAAGGAATTGCTAATGATCCTTTTACAGGAATCTGTATTTCTAATGTGACTATCCATAGTGGATAA 1254 0.4107 MKPCPKLSNSCVVGVIYTVLLLGLQGVRVVECRVANGLDCFEYPAISCRKHSAVLTDFGGVGDGKTSNTKAFQYAISNLSHYASDGGALLVVPPGKWLTGSFNLTSHFTLFLQKEATILGSQDESEWPTLPVLPSYGRGRDAPDGRLSSLIFGTNLTDVIITGYNGTIDGQGCYWWDKFHKGELKLTRPYMIEIMFSDHIQISNLTLINSPSWFVHPIYTSDIIIQGLTILAPVDSPNTDGIDPDSCSNIRIEDCYIVSGDDCVAIKSGWDEYGIKFGMPSQHIIIRRLECVSPDSAMIALGSEMSGGIQDVRAEDLTAINTQSAVRIKTAVGRGAYVRDIFIKGMNLNTMKYVFWMTGSYSSHPDNGFDPKALPNITGINYRDVIAENVTYSARLEGIANDPFTGICISNVTIHSG* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1471 417 Pfam Glycosyl hydrolases family 28 149 417 IPR000743 GO:0004650|GO:0005975
Gso16g1471 417 PANTHER PECTIN LYASE-RELATED 16 415 - -
Gso16g1471 417 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 16 415 - -
Gso16g1471 417 Gene3D - 24 417 IPR012334 -
Gso16g1471 417 SUPERFAMILY Pectin lyase-like 47 415 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1471 Gso-Chr16 34893162 34896408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1471 10 414 Glycoside Hydrolase AT3G61490 68.395 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1471 - - gmx:100785005 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1471 16 34893162 34896408 Gso9g1088 9 31201286 31210924 GST
Gso16g1471 16 34893162 34896408 Gso10g2065 10 47633488 47636279 PCT
Gso10g2065 10 47633488 47636279 Gso16g1471 16 34893162 34896408 PCT