Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2065 ATGGAGATATGTCCACGAATCCAAAATTCCTATGTCATTGGTGTGATATCCTTAGTTCTTATGTTGGGATCACTAAATGTGAAGGTAGCACAATGCAGAGTAGCCAGTAAATTGGTTAACATTGAATACCCTGCCATAAATTGTCGAAAACATAGTGCAGTTTTGACAGATTTTGGTGGGGTTGGTGATGGCAAAACCTCAAACACAAAGGCCTTTCAATCTGCAATAAGCAAACTCAGCCGAGTTGCATCTGATGGGGGTGCACAACTTATTGTGCCACCTGGGAAATGGCTTACAGGATCCTTTAATCTCACAAGTCATTTCACTCTTTTTCTCCACAAGGATGCTGTTATTCTTGCATCTCAGGATGAATCAGAATGGCCCCAACTTCCTGTATTACCTTCATATGGAAGAGGAAGAGATGCTCCCGGAGGAAGGTTTAGCAGTCTAATTTTTGGAACTCACCTCACAGATGTTGTAATAACTGGTCAAAATGGTACTATTGATGGGCAAGGATCTTATTGGTGGGACAAGTTCCACAAGAACCAATTGAATCTCACCAGGCCATACATGATTGAGATCATGTACTCTGATCAAATCCAAATATCAAATCTCACTTTGGTCAACTCCCCATCCTGGTTTGTCCATCCAATTTACAGCAGTAACATAACAATAAAAGGGCTTACCATTCTCGCACCAGTGGACTCTCCAAACACAGATGGAATTGACCCAGATTCATGTACAAACACTAGGATTGAAGACTGCTACATTGTTTCTGGTGATGATTGTGTGGCAGTAAAAAGTGGTTGGGATGAGTATGGAATTAAATTTGGAAAGCCAACTCAACACCTAGTCATTAGAAGGCTCACATGTATTTCCCCTGATAGTGCCATGATTGCTTTAGGGAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGTTGAAGATATCACTGCCATCAACACTCAATCAGCAGTTAGAATCAAAACAGCAGTTGGTAGAGGTGGATATGTTAAAGACATATTTGTCAAAGGAATGACCCTCAGCACCATGAAATATGTATTTTGGATGACTGGCTCTTATGGATCACACCCTGACCCTGCCTTTGATCCCAAAGCACTTCCTAATATTACTGGAATAAATTACAGAGATGTTGTTGCAACGAATGTCACATATTCTGCAAAACTTGAAGGAATTTCTAATGACCCTTTCACAGGAATCTGCATTTCTAATGTGAGTATCCAAGTGAGTGAACAAAAGAAGAAGCTTCAGTGGAATTGCACTGATGTTGCTGGAGTTACGAGCAATGTCACTCCTAACACTTGTCAATTGTTGCCAGAGAAAGGGAAATTCGATTGTCCTTTTCCCAATGACAAACTGTCCATTGAAAATGTTCAGTTGAAGACTTGTTCCCTTCAGAATGTCTTCTAG 1431 0.4067 MEICPRIQNSYVIGVISLVLMLGSLNVKVAQCRVASKLVNIEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQSAISKLSRVASDGGAQLIVPPGKWLTGSFNLTSHFTLFLHKDAVILASQDESEWPQLPVLPSYGRGRDAPGGRFSSLIFGTHLTDVVITGQNGTIDGQGSYWWDKFHKNQLNLTRPYMIEIMYSDQIQISNLTLVNSPSWFVHPIYSSNITIKGLTILAPVDSPNTDGIDPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGKPTQHLVIRRLTCISPDSAMIALGSEMSGGIQDVRVEDITAINTQSAVRIKTAVGRGGYVKDIFVKGMTLSTMKYVFWMTGSYGSHPDPAFDPKALPNITGINYRDVVATNVTYSAKLEGISNDPFTGICISNVSIQVSEQKKKLQWNCTDVAGVTSNVTPNTCQLLPEKGKFDCPFPNDKLSIENVQLKTCSLQNVF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2065 476 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 16 471 - -
Gso10g2065 476 SUPERFAMILY Pectin lyase-like 48 446 IPR011050 -
Gso10g2065 476 SMART pbh1 377 411 IPR006626 -
Gso10g2065 476 SMART pbh1 220 246 IPR006626 -
Gso10g2065 476 SMART pbh1 309 330 IPR006626 -
Gso10g2065 476 SMART pbh1 247 268 IPR006626 -
Gso10g2065 476 Pfam Glycosyl hydrolases family 28 150 431 IPR000743 GO:0004650|GO:0005975
Gso10g2065 476 PANTHER PECTIN LYASE-RELATED 16 471 - -
Gso10g2065 476 Gene3D - 30 443 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2065 Gso-Chr10 47633488 47636279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2065 7 472 Glycoside Hydrolase AT3G48950 67.516 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2065 - - gmx:100779166 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2065 10 47633488 47636279 Gso10g2065 10 47633488 47636279 ECH
Gso16g1471 16 34893162 34896408 Gso10g2065 10 47633488 47636279 PCT
Gso9g1088 9 31201286 31210924 Gso10g2065 10 47633488 47636279 PCT
Gso10g2065 10 47633488 47636279 Gso16g1471 16 34893162 34896408 PCT
Gso10g2065 10 47633488 47636279 Gso9g1088 9 31201286 31210924 PCT