Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0542 ATGGCGAGTCTGCTTCGCAACGCTAACATTTCCCTCCTCAAACGTTCTCTCTTCCACTCTGACCTTCTAACGCGCTTTTGCTTTAAACCAGGAGTATTGGGCACGTCTCAAGTTTTGAGCTTTTCAACTCGTAAAAGGAGGTCTAAATCAGATGGAAGTGACTCAGGTGAAGAGAACTTGTCTAAGAAAGATTTGGCATTACAACAAGCTATTGATCAGATCACCTCTGCATATGGAAAGGGATCTATCATGTGGCTTGGTCGTTCCGTGGCACCAAAAAATGTACCTGTGGTGTCTACTGGTTCTTTTGCTCTGGATATAGCACTTGGGGTTGGAGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAAGCACAAAAGCAAGGAGGCTACTGTGCCTTTGTTGATGCTGAACATGCACTTGATAAGACACTTGCAGAGTCAATTGGCGTAGATACTAAGAACTTGCTTCTCTCACAACCGGATTGTGGCGAACAAGCACTTAGCCTTGTTGATACCTTAATCCGGAGTGGTTCAGTTGATGCAATTGTTGTTGATAGTGTAGCTGCTCTTGTTCCTAAAGGCGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCTCTTCGGAAATTGTGCCACTCCTTGTCACTTTCACAGTGTATATTGATTTTTATAAATCAGGTGAGGTCAAAGATATCTACTTTTGGGGGATATGGTGGGCCCACTGAAGTTACTTGTGGTGGTAATGCACTGAAGTTTTATGCTTCTGTGCGTCTAAATATCAAAAGAATTGGGTTTGTCAAGAAGGGTGAAGAGACTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGATTGAGTTTGGCAAGGGTATAAGTAGAGAAGCAGAGATCATAGAGTTGAGCGTAAAATACAAAATCATAAAGAAGAGTGGTTCGTTTTTTGAATATAATGGCAGGAATTTCCATGGCAAGGATGCTCTAAAGAGATTCCTGGCTGAGAGCGATGGAGTACAAGAATTAGCAACAAAGCTCAGGGAGAAGATTCTTGATGCTGAGCCAGAACTGGAGCCAGAGGAGCAGGAGATGATTGGAGATGTTATGGAACTAATGGAAGAAATGGTATCGCTTGATTCCACCGATGAAGCTGCCGCTCCTGCTCCTGCCCCTGTTGCTGCGGAAGCATAA 1299 0.4434 MASLLRNANISLLKRSLFHSDLLTRFCFKPGVLGTSQVLSFSTRKRRSKSDGSDSGEENLSKKDLALQQAIDQITSAYGKGSIMWLGRSVAPKNVPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFVDAEHALDKTLAESIGVDTKNLLLSQPDCGEQALSLVDTLIRSGSVDAIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGYGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFEIEFGKGISREAEIIELSVKYKIIKKSGSFFEYNGRNFHGKDALKRFLAESDGVQELATKLREKILDAEPELEPEEQEMIGDVMELMEEMVSLDSTDEAAAPAPAPVAAEA* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0542 432 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 PRINTS RecA protein signature 358 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Gso9g0542 432 ProSiteProfiles RecA family profile 2. 260 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Gso9g0542 432 Pfam recA bacterial DNA recombination protein 66 330 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Gso9g0542 432 CDD recA 62 389 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 Gene3D - 93 389 IPR027417 -
Gso9g0542 432 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 411 - -
Gso9g0542 432 SUPERFAMILY RecA protein, C-terminal domain 330 384 IPR023400 -
Gso9g0542 432 SMART AAA_5 116 290 IPR003593 -
Gso9g0542 432 Hamap Protein RecA [recA]. 63 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 PANTHER RECA 1 411 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 TIGRFAM tigrfam_recA: protein RecA 63 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso9g0542 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 329 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0542 Gso-Chr9 6135349 6141715 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0542 K03553 - gmx:100798983 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1407 15 15530668 15539595 Gso9g0542 9 6135349 6141715 GST
Gso17g0453 17 4099133 4105449 Gso9g0542 9 6135349 6141715 PCT
Gso9g0542 9 6135349 6141715 Gso17g0453 17 4099133 4105449 PCT