Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1407 ATGGCGAGTCTGCTTCGGAACGCTAACACATCCCTCCTCAAACGTTCTCTCTTCCACTCCGACCTTCTAACGCGCTTTTGCTTTAAACCGGGAGTGTTGGGCACGTCTCAAGTTTTAAGCTTTTCAACTCGTAAAAGGAGGTCTAAATCAGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGATATGGCATTACAACAAGCTATTGATCAAATCACATCTGCATATGGAAAGGGATCTATCATGTGGCTTGGTCGTTCCATGGCACCAAAAAATGTACCTGTGGTGTCTACTGGTTCTTTTGCTCTGGATATAGCACTTGGGGTTGGAGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATATGATTGCGGAAGCACAAAAGCTAGGAGGCTACTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCAATTGGTGTAGATACTAAGAACTTGCTTCTCTCACAACCCGATTGTGGTGAACAAGCACTTAGCCTTGTGGATACCTTAATCCGGAGTGGTTCAGTTGATGCAATTGTTGTTGATAGTGTAGCTGCTCTTGTTCCTAAAGGCGAGCTTGATGGGGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCTCTTCGGAAATTGTGCCACTCCTTGTCACTTTCACAGTGTATATTAGTTTTTATAAACCAGGTGAGGTCAAAAATTTCTACTTTTGGGGGATATGGTGGGCCCACTGAAGTTACTTGTGGTGGTAATGCACTGAAGTTTTATGCTTCTGTGCGGCTAAATATCAAAAGAATTGGGTTTGTCAAGAAGGGTGAAGAGACTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGATTGAGTTCGGCAAGGGTATAAGTAGAGAAGCGGAGATCATAGAGTTGAGCGTAAAATACAAAATCATAAAGAAGAGTGGTTCATTTTTTGAATATAATGGCCGGAATTTCCATGGCAAGGATGCTCTAAAGAGATTCCTGGCGGAGAGTGATGGAGTACAAGAATTAGCAACAATGCTCAGGGAGAAGATTCTTAATGCTGAGCCAGAACTGGAGCAAGAGGAGCAGGAGATGATTGGAGATGTTATGGAACTAATGGAAAAAACGCTTGATTCCACTGATGAAGCAGCTTCTCGTGCTCCTGCCCCTGTTGCTGCAGAAGCTTAA 1293 0.4416 MASLLRNANTSLLKRSLFHSDLLTRFCFKPGVLGTSQVLSFSTRKRRSKSDGSDSGEENMSKKDMALQQAIDQITSAYGKGSIMWLGRSMAPKNVPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHMIAEAQKLGGYCAFVDAEHALDKTLAESIGVDTKNLLLSQPDCGEQALSLVDTLIRSGSVDAIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILVFINQVRSKISTFGGYGGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEETLGSQVLVKVVKNKHAPPFKTAQFEIEFGKGISREAEIIELSVKYKIIKKSGSFFEYNGRNFHGKDALKRFLAESDGVQELATMLREKILNAEPELEQEEQEMIGDVMELMEKTLDSTDEAASRAPAPVAAEA* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1407 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 329 IPR027417 -
Gso15g1407 430 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso15g1407 430 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso15g1407 430 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso15g1407 430 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso15g1407 430 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso15g1407 430 PRINTS RecA protein signature 358 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso15g1407 430 TIGRFAM tigrfam_recA: protein RecA 63 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso15g1407 430 ProSiteProfiles RecA family profile 2. 260 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Gso15g1407 430 PANTHER RECA 1 412 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso15g1407 430 SUPERFAMILY RecA protein, C-terminal domain 330 375 IPR023400 -
Gso15g1407 430 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Gso15g1407 430 CDD recA 62 389 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso15g1407 430 Hamap Protein RecA [recA]. 63 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso15g1407 430 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 412 - -
Gso15g1407 430 SMART AAA_5 116 290 IPR003593 -
Gso15g1407 430 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Gso15g1407 430 Gene3D - 93 392 IPR027417 -
Gso15g1407 430 Pfam recA bacterial DNA recombination protein 66 330 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1407 Gso-Chr15 15530668 15539595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1407 K03553 - gmx:100807627 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1407 15 15530668 15539595 Gso9g0542 9 6135349 6141715 GST
Gso17g0453 17 4099133 4105449 Gso15g1407 15 15530668 15539595 PCT
Gso15g1407 15 15530668 15539595 Gso17g0453 17 4099133 4105449 PCT