Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0453 ATGACATGTTGTCACATTCCATTTTCCTTCTTCAAAATTTGTTCTTCCTTTGAACCCCTCAAAGTCAAACCTGCTTCTATGGCGAGACTGCTTCGGAACACTTCCCTTCTCACACGCTCCCTATTCTTCCCTAAGGTCTTTAAACTAGGAATGATTGGCACTTCTCAGATTTTGAGCTTCTCGTCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGAGTTGGCCCTTCAGCAAGCTCTTGATCAGATCACTTCCGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGTTCTGTCTCACCAAAAAATGTACCTGTTGTGTCTACTGGTTCTTTTGCTCTTGATGTAGCACTAGGAATTGGTGGTCTTCCAAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAAAAGCAAGGAGGCTATTGTGTCTTTGTCGATGCCGAGCATGCCCTTGATAAGACACTGGCAGAGTCTATTGGTGTGAATACAACGAACTTGCTTCTCTCCCAACCTGATTGTGGTGAACAAGCACTAAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAGTTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCTCTTCGAAAATTGAGCCATGCCTTGTCACTTTCTCAAACTATATTAATTTTTATAAACCAGGTGAGGTCAAAGATTTCAACTTTTGGGGGATTTAGTGGGCCTACTGAAGTTACTTGTGGTGGGAATGCATTGAAATTCTATGCTTCAGTGCGGCTAAATATCAAGAGAATAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCCGAGTTTGAGCTTCAATTTGGCAAAGGTATATGTAAAGAAACAGAGATTATAGACTTGAGCGTAAATCACAAACTCATCTCAAAGGCTGGTGCCATGTTTTACTATAACGAACATAGTTTCCGTGGTAAGGATGCCCTAAAGAATTTTCTGGCCGAGAATCGAAGTGCATTAGAAGAACTTGAAATGAAGCTCAGGGAGAAGCTTCTTAATGCTGAGACAGAAAAGATGCAAGAGTCGGATGTAATTAATGGATATGTTACCGAAGAAATTGCAACAGTTGATTCTACTAATGACAATGTTACAGAAAAAATTGCAACAGTTGATTCTACTGATGAAGAAGCTGCAGCTATTGTTGAAGCATGA 1380 0.4196 MTCCHIPFSFFKICSSFEPLKVKPASMARLLRNTSLLTRSLFFPKVFKLGMIGTSQILSFSSKGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDVALGIGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTTNLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQTILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQFGKGICKETEIIDLSVNHKLISKAGAMFYYNEHSFRGKDALKNFLAENRSALEELEMKLREKLLNAETEKMQESDVINGYVTEEIATVDSTNDNVTEKIATVDSTDEEAAAIVEA* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0453 459 Pfam recA bacterial DNA recombination protein 86 349 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 PRINTS RecA protein signature 172 201 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 PRINTS RecA protein signature 206 235 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 PRINTS RecA protein signature 244 273 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 PRINTS RecA protein signature 292 320 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 PRINTS RecA protein signature 325 354 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 PRINTS RecA protein signature 378 395 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 PANTHER RECA 27 436 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 Hamap Protein RecA [recA]. 83 410 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 ProSiteProfiles RecA family profile 1. 114 273 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Gso17g0453 459 ProSitePatterns recA signature. 295 303 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Gso17g0453 459 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 27 436 - -
Gso17g0453 459 TIGRFAM tigrfam_recA: protein RecA 83 405 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 CDD recA 82 409 IPR013765 GO:0003697|GO:0005524|GO:0006281
Gso17g0453 459 Gene3D - 113 418 IPR027417 -
Gso17g0453 459 SMART AAA_5 136 310 IPR003593 -
Gso17g0453 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 349 IPR027417 -
Gso17g0453 459 SUPERFAMILY RecA protein, C-terminal domain 352 406 IPR023400 -
Gso17g0453 459 Coils Coil 382 416 - -
Gso17g0453 459 ProSiteProfiles RecA family profile 2. 281 354 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0453 Gso-Chr17 4099133 4105449 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0453 K03553 - gmx:100781271 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0453 17 4099133 4105449 Gso17g0453 17 4099133 4105449 ECH
Gso17g0453 17 4099133 4105449 Gso15g1407 15 15530668 15539595 PCT
Gso17g0453 17 4099133 4105449 Gso9g0542 9 6135349 6141715 PCT
Gso15g1407 15 15530668 15539595 Gso17g0453 17 4099133 4105449 PCT
Gso9g0542 9 6135349 6141715 Gso17g0453 17 4099133 4105449 PCT