Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0539 ATGGTAGCTGGGAAATACCCTTCCCCCACATACTTCATCCTCCTGCTCATAACCATAACACGTTTGATCTCCACAGTGGGCAAGACCTCCCAATGGATGAAGGCCCTAACGCCGCCTCCGGAACTCGCCTCGGTCTCCCTCGATGACACCATCTTCAGCAAGCTCCGCAACGACCCAGAGGCCCTCCAGGGGAGGGCCTCCAGGGACTACGGGAACCTCGTCCGCGAGGTTCCCTCGGCGGTCTTCCACCCGACCTCGTCGAGCGACATCGCGAGGCTGATCAAGCTGTCGTACAACGGTTCTGTCCCCTTCAAGATAGCGGCGAGGGGGCAAGGGCACTCGACGAGGGGCCAGGCGATGGTACGTGATGGGGTGGTGGTGGACATGGCCGGGTTCAGAGAGAGAGGGAATGGAGAGGGAATAAGGGTTGTGATGAGTGTTGTTGTGGACCCTAATAATAAGAATGGTTATGGTTACTATTATGCTGATGTTGGAGGGGAACAGTTGTGGATCGATGTGCTAAACGCCACGCTTGAGCATGGACTTGCACCTATGTCCTGGACTGATTACTTGTACTTGACGGTGGGAGGAACTCTCTCCAATGCTGGCATCAGTGGCCAGACATTCCGCTATGGTCCTCAAATCACCACTGTCCGCCAAATGGACGTCATCACTGGAAAGGGAGAATTTGTGACTTGCTCTCAGCAGACGAATTCGGAGTTGTTCCACGCGGTTCTGGGGGGCTTAGGACAATTTGGAATTATAACAAGGGCAAGAATCGCTCTTGCCCCAGCTCCCAAGAGGGTTAAATGGGTGAGACTTTTGTACAATGACTTTTCTGCTTTCACCAAAGACCAGGAACAACTAATCTCAATCACTAGAAGGAAACAAAATATTGCACTGGATTATTTGGAAGGATTGCTGCTAATGCACCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAGCCGACCATGCCCGAATAATTTCGCTAGTAACTAAACACAGCGTCCTCTATTGCCTAGAAGTTGCCAAATATTATGATGGCCAAAATGAAAACAATGTGGACAAGGAACTCAAAGTTTTACTACAAGGACTGAGCTATATCCCTGGATTTTACTATGAAAAAGATGTCTCGTATGTTGAGTTCTTGAATAGAGTTCGAAGTGGAGAGTTGAAGCTACAATCACAAGGACTATGGGATGTTCCTCACCCATGGCTTAATTTGTTTATACCGAAATCTCAAATCATGGAATTTGACTCGGGCGTGTTCAAGAATATCATCCTTAAACGAAACATTACCACAGGACCCGTCTTGGTTTACCCCATGAATAGAAACAAGTGGGACAATAGGATGTCAGCATCAATACCCGACGAGGATATCTTCTACACAGTTGGATTTTTGCATTCAAGTGGGTTTGATAATTGGAAGGCCTATGATGCTCAAAATAAAGAAATTCTACAATTTTGTAACGATTCTGGGATCAAGGTTAAGCAATATCTTCCCCACTACCGCACACAAGAAGATTGGACAAACCATTTTGGCCCTAAATGGAGGACTTTTGTAGAAAGAAAACACCAGTTTGATCCAAAAATGATTCTATCACCTGGACAAAGAATCTTTAACAATTAA 1641 0.4662 MVAGKYPSPTYFILLLITITRLISTVGKTSQWMKALTPPPELASVSLDDTIFSKLRNDPEALQGRASRDYGNLVREVPSAVFHPTSSSDIARLIKLSYNGSVPFKIAARGQGHSTRGQAMVRDGVVVDMAGFRERGNGEGIRVVMSVVVDPNNKNGYGYYYADVGGEQLWIDVLNATLEHGLAPMSWTDYLYLTVGGTLSNAGISGQTFRYGPQITTVRQMDVITGKGEFVTCSQQTNSELFHAVLGGLGQFGIITRARIALAPAPKRVKWVRLLYNDFSAFTKDQEQLISITRRKQNIALDYLEGLLLMHQGPINNWRSSFFPLADHARIISLVTKHSVLYCLEVAKYYDGQNENNVDKELKVLLQGLSYIPGFYYEKDVSYVEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPKSQIMEFDSGVFKNIILKRNITTGPVLVYPMNRNKWDNRMSASIPDEDIFYTVGFLHSSGFDNWKAYDAQNKEILQFCNDSGIKVKQYLPHYRTQEDWTNHFGPKWRTFVERKHQFDPKMILSPGQRIFNN* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0539 546 Pfam FAD binding domain 78 234 IPR006094 GO:0050660
Gso9g0539 546 Gene3D - 129 267 IPR016169 -
Gso9g0539 546 ProSiteProfiles PCMH-type FAD-binding domain profile. 74 265 IPR016166 GO:0071949
Gso9g0539 546 PANTHER GULONOLACTONE OXIDASE 12 545 - -
Gso9g0539 546 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 78 113 IPR006093 GO:0016491
Gso9g0539 546 SUPERFAMILY FAD-linked oxidases, C-terminal domain 266 545 IPR016164 GO:0003824|GO:0050660
Gso9g0539 546 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 12 545 - -
Gso9g0539 546 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 266 544 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gso9g0539 546 Gene3D - 64 544 IPR016167 -
Gso9g0539 546 Gene3D - 268 503 IPR016170 -
Gso9g0539 546 SUPERFAMILY FAD-binding/transporter-associated domain-like 64 264 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0539 Gso-Chr9 6080326 6084941 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0539 K00279 - gmx:100797928 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1402 15 15444798 15449324 Gso9g0539 9 6080326 6084941 GST
Gso13g0757 13 21879865 21883981 Gso9g0539 9 6080326 6084941 PCT
Gso17g0458 17 4144243 4148520 Gso9g0539 9 6080326 6084941 PCT
Gso9g0539 9 6080326 6084941 Gso13g0757 13 21879865 21883981 PCT
Gso9g0539 9 6080326 6084941 Gso17g0458 17 4144243 4148520 PCT