Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1402 ATGGTTGCTGAGAACTACCCTTCTCCCACATACTTCATCCTCCTGTTCATAACCATAACACGTTTGATCTCCACAGTGGGCAAAACCTCCCAATGGACGAAGGCCCTGTCGCTGCCTCCGGAACTCGCCTCCGTCTCCCTCGACGACACCATCTTCTGCAAGCTCCGTGACGACCCAGAGGCCCTCCAGGGAAGGGCCTCCAGGGACTACGGGAACCTCGTCCGCGAGGTTCCCTTGGCAGTCTTCCACCCAGCCTCAGCGAGCGACATCGCGAGGCTGATCAAGCTGTCGTACAACGGCTCTGTCCCCTTCAAGATTGCGGCGAGGGGGCAAGGGCACTCGACAAGGGGCCAGGCGATGGCACGTGAGGGGGTGGTGGTGGACATGGCGGGGTTCAGAGAGAGAGGGAATGGAGTGGGGATAAGGGTTGTGAGTAGTGTGGACCCTAATAATAAGAATGGTTACTACTATTATGCGGATGTTGGAGGGGAACAGTTGTGGATCGATGTGCTACACGCCACGCTCGAGCATGGACTTGCACCTATGTCCTGGACTGATTACTTGTACTTGACGCTGGGAGGGACTCTCTCCAATGCTGGCATCAGTGGCCAGACATTCCGCTATGGTCCTCAAATCACCACTGTCCGGGAAATGGACGTAATCACCGGAAAGGGAGAATTTGTGACTTGCTCTCAGCAGACGAATTCGGAGTTGTTTCACGCGGTTCTTGGAGGCTTAGGACAATTTGGAATTATAACAAGGGCAAGAATTGCTCTTGCGCCAGCTCCGAAGAGGGTTAAATGGGTGAGACTTTTGTACAATGACTTTTCTGCTTTTACCAAAGACCAGGAACAACTAATATCTATCACTGGAAGGAAACAAAATGTTTCACTGGATTATTTGGAAGGATTGCTGCTAATGCACCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAGCCGACCATGCCCGAATAATTTCGCTAGTAACTAAACACAGCGTCCTCTATTGCCTAGAAGTTGCCAAATATTATGATGGCCAAAATGAAAACAATGTGGACAAGGAACTCCAAGTTTTACTACAAGGATTGAGCTATATCCCTGGATTTTACTATGAAAAAGATGTCTCATATTTTGAGTTCTTGAATAGAGTCCGAAGTGGAGAGTTGAAGCTACAGTCACAAGGACTATGGGATGTTCCTCACCCGTGGCTTAATTTGTTTATACCGAAATCTCAAATCATGGAATTTGACTCGGGCGTGTTCAAGAATATCATCCTTAAACGAAACATCACCACAGGACCTGTCTTGGTTTACCCCATGAATAGAAACAAGTGGGACAATAGGATGTCAGCATCAATACCCGACGAGGATATCTTCTACACAGTTGGATTTTTGCATTCAAGTGGGTTTGATAATTGGAAGGCCTATGATGCTCAAAATAAAGAAATTCTACAATTTTGTAACGTTGCTGGGATCAAGGTTAAGCAATATCTTCCCCACTATCGCACACAAGAAGATTGGGCAAACCATTTTGGCCCTAAATGGAGGACTTTTGTAGAAAGAAAACACCAGTTTGATCCAAGAATGATTCTATCACCTGGACAAAGAATCTTTAACAATTAA 1632 0.4675 MVAENYPSPTYFILLFITITRLISTVGKTSQWTKALSLPPELASVSLDDTIFCKLRDDPEALQGRASRDYGNLVREVPLAVFHPASASDIARLIKLSYNGSVPFKIAARGQGHSTRGQAMAREGVVVDMAGFRERGNGVGIRVVSSVDPNNKNGYYYYADVGGEQLWIDVLHATLEHGLAPMSWTDYLYLTLGGTLSNAGISGQTFRYGPQITTVREMDVITGKGEFVTCSQQTNSELFHAVLGGLGQFGIITRARIALAPAPKRVKWVRLLYNDFSAFTKDQEQLISITGRKQNVSLDYLEGLLLMHQGPINNWRSSFFPLADHARIISLVTKHSVLYCLEVAKYYDGQNENNVDKELQVLLQGLSYIPGFYYEKDVSYFEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPKSQIMEFDSGVFKNIILKRNITTGPVLVYPMNRNKWDNRMSASIPDEDIFYTVGFLHSSGFDNWKAYDAQNKEILQFCNVAGIKVKQYLPHYRTQEDWANHFGPKWRTFVERKHQFDPRMILSPGQRIFNN* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1402 543 SUPERFAMILY FAD-linked oxidases, C-terminal domain 263 542 IPR016164 GO:0003824|GO:0050660
Gso15g1402 543 Gene3D - 64 541 IPR016167 -
Gso15g1402 543 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 78 113 IPR006093 GO:0016491
Gso15g1402 543 Gene3D - 129 264 IPR016169 -
Gso15g1402 543 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 13 542 - -
Gso15g1402 543 PANTHER GULONOLACTONE OXIDASE 13 542 - -
Gso15g1402 543 Pfam FAD binding domain 78 231 IPR006094 GO:0050660
Gso15g1402 543 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 263 541 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gso15g1402 543 Gene3D - 265 500 IPR016170 -
Gso15g1402 543 SUPERFAMILY FAD-binding/transporter-associated domain-like 65 261 IPR036318 GO:0050660
Gso15g1402 543 ProSiteProfiles PCMH-type FAD-binding domain profile. 74 262 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1402 Gso-Chr15 15444798 15449324 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1402 K00279 - gmx:100804431 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1402 15 15444798 15449324 Gso9g0539 9 6080326 6084941 GST
Gso13g0757 13 21879865 21883981 Gso15g1402 15 15444798 15449324 PCT
Gso17g0458 17 4144243 4148520 Gso15g1402 15 15444798 15449324 PCT
Gso15g1402 15 15444798 15449324 Gso13g0757 13 21879865 21883981 PCT
Gso15g1402 15 15444798 15449324 Gso17g0458 17 4144243 4148520 PCT