Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0458 ATGGCTCTAAACTACCCTTTTTTAACCTACTTCATACTACTGCTAGTAACCATAACCCGTTTGATATTCACTGTGGGAAAAACTGAGCAATGGAAAGCTCCGATTCTATCAGAGCTTGACATTGATAACATATCCCACAAACTCCATGATGACCCTGAAACCATTCAAATGGCTTCAAGGGACTATGGCCATTTAACGCATGAATTCCCATTAGCTGTGTTTCGTCCATCTTCTATAGATGACATAGTCACCTTGATAAAATCTTCGTACAATAGCTTTGCCCCTTTTGACATAGCTGCGAGGGGCCAAGGCCACTCCACTCATGGACAAGCCATGGCTCGTGATGGGATTGTGGTGGACATGGCCAGCCTAAGAAAACAAAGAAATGGGGTTGCGATTAGTGTCTCTAAGGACCCTTTGATGGGTCACTATGCTGATGTTGGAGGGGAACAACTCTGGATTGATGTGCTACATGCCACACTTGAATATGGACTTGCACCAGTTTCTTGGACTGATTATTTGTACTTGACCGTGGGAGGGACACTTTCTAATGCTGGAATCAGTGGCCAGAGCTTCCGTTATGGACCTCAAATCAGCAACGTTCATGAAATGGATGTCATCACTGGAAAAGGAGAGTTCGTAACATGCTCTTCACAGAAGAACTTGGAGTTATTCCACGCGGTTCTTGGAGGCTTGGGACAATTTGGAGTTATAGCAAGGGCGAGAATTGCTCTTGAGCCAGCACCCAAAAGGGTTAAGTGGGTCAGACTACTTTATAGTGACTTTTCTGCTTTTACCAAAGACCAGGAACGATTAATCTCAATCAATGGAAGGAAACAAAAGAACGCATTGGATTTTCTGGAAGGGATGCTGCTAATGAACCAAGGTCCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATCCCAGAATAGCTTCTTTAATAACTGAACATAGCATCCTCTACTGTCTTGAAGTGGCTAAATATTATGACGAACAAACCGAGTTAAATGTGGACAAGGAAATTGAAGTTTTGCTCCAAGGACTAGCCTATATCCCTGGATTTAATTATGAGAAAAATGTCTCGTACGTTGAGTTCTTGAATAGGGTCCGAAGTGGAGAGTTGAAACTTCAGTCACAAGGACTGTGGGAAGTTCCTCACCCGTGGCTTAATTTGTTTATACCAAAATCTCAAATCTTGGATTTTAATTCAGGAGTATTCAAAGATATAGTTCTTAAAAGAAACATCTCCTCTGGACCAGTCTTGGTTTATCCCATGAATAGAAACAAGTGGGACGATAGGATGTCAGCATCTATACCAGACGAGGATGTTTTCTACACAGTTGGGTTTTTGCACTCAAGTGGGTTTGATACTTGGAAGGCATATGATGCTCAAAACAGAGAAATTTTGGAGTTCTGTAGAGATGCTGGCATCATGGTCAAGCAATATCTTCCCAACCACAGCACACAAGAAGATTGGACAAACCATTTTGGTGCTAAATGGATGAAATTCTTAGAAAGAAAACATCAGTTTGATCCAAGAATGATTCTATCACCTGGGCAAAAAATCTTCCACAAAAAATTACAGCCAGTGTTTTAA 1608 0.416 MALNYPFLTYFILLLVTITRLIFTVGKTEQWKAPILSELDIDNISHKLHDDPETIQMASRDYGHLTHEFPLAVFRPSSIDDIVTLIKSSYNSFAPFDIAARGQGHSTHGQAMARDGIVVDMASLRKQRNGVAISVSKDPLMGHYADVGGEQLWIDVLHATLEYGLAPVSWTDYLYLTVGGTLSNAGISGQSFRYGPQISNVHEMDVITGKGEFVTCSSQKNLELFHAVLGGLGQFGVIARARIALEPAPKRVKWVRLLYSDFSAFTKDQERLISINGRKQKNALDFLEGMLLMNQGPINNWRSSFFPLSDHPRIASLITEHSILYCLEVAKYYDEQTELNVDKEIEVLLQGLAYIPGFNYEKNVSYVEFLNRVRSGELKLQSQGLWEVPHPWLNLFIPKSQILDFNSGVFKDIVLKRNISSGPVLVYPMNRNKWDDRMSASIPDEDVFYTVGFLHSSGFDTWKAYDAQNREILEFCRDAGIMVKQYLPNHSTQEDWTNHFGAKWMKFLERKHQFDPRMILSPGQKIFHKKLQPVF* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0458 535 Pfam FAD binding domain 70 217 IPR006094 GO:0050660
Gso17g0458 535 Gene3D - 251 486 IPR016170 -
Gso17g0458 535 Gene3D - 51 527 IPR016167 -
Gso17g0458 535 PANTHER GULONOLACTONE OXIDASE 11 527 - -
Gso17g0458 535 SUPERFAMILY FAD-binding/transporter-associated domain-like 47 247 IPR036318 GO:0050660
Gso17g0458 535 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 11 527 - -
Gso17g0458 535 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 70 105 IPR006093 GO:0016491
Gso17g0458 535 SUPERFAMILY FAD-linked oxidases, C-terminal domain 249 527 IPR016164 GO:0003824|GO:0050660
Gso17g0458 535 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 527 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gso17g0458 535 Gene3D - 121 250 IPR016169 -
Gso17g0458 535 ProSiteProfiles PCMH-type FAD-binding domain profile. 66 248 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0458 Gso-Chr17 4144243 4148520 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0458 K00279 - gmx:100787676 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0757 13 21879865 21883981 Gso17g0458 17 4144243 4148520 GST
Gso17g0458 17 4144243 4148520 Gso15g1402 15 15444798 15449324 PCT
Gso17g0458 17 4144243 4148520 Gso9g0539 9 6080326 6084941 PCT
Gso15g1402 15 15444798 15449324 Gso17g0458 17 4144243 4148520 PCT
Gso9g0539 9 6080326 6084941 Gso17g0458 17 4144243 4148520 PCT