Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0538 ATGCCACAGAGGAATTTAGTACTATTTTCCACAACTATGGTTGTGCTATTGCTATCTAGCACAGTGCTCACACAAGCACAACCACGATCATGGACAGCATTCCAAGCATCCAAAGAACTAGCCACAAAGCTTAGTCGTAACCCTCAAACCTTTCCACATGCCTCAACCGATTATGGCCACATAGTTCACAAAACCCCAGTGGCAATTTTCAATCCATCTTCTGTTAGTGACATCTTGGCCTTGATACATTTCTCAAACTCTCTTCCTAACCCATTCCCCATAGCCCCTAGAGGGAAAGCACACTCTGTTCATGGACAAGCCATGACAAAAGATGGGGTGGTGTTGAATATGACTAACCTCAATAGCAGTTTTCAAAATGGGTTAGGGGTTTTGGTGTCTGCTTGTGATGGAAAAGGTCCATTGATTTGTTATGCTGATGTAGGTGGTGGCCAAATGTGGATCGATGTCTTGCATGCATCCCTTGAACGTGGACTCACACCTTTGTCTTTGACTGATTATATGTATGCCACTGTTGGGGGCACACTATCTAATGCTGGCATGGGTGGCATGTCCTTTCGATTTGGACCTCAGATCTCTAATGTTCTTGAATTGGATGTTATTACAGGGAAAGGAGACCTTGTGACTTGCTCCAAGGAGCAGAACTCAGAGGCATTTTACGCTGCTCTTGGAGGATTAGGTCAATTTGGGGTGATAACAAGAGCAAGAATACCTCTAGGACCTGCACCTACTAGGGTAAAATGGCTCCGCCTGCTATACAACAACTTCACTGCATTTTCAAGAGACCAAGAACATTTAATATCGTTCAGTGAAAGGAATGACATTGCTACAGCAGATTATGTAGAAGGCATGCTTCTATTGAATCAGCCGCCACTGGATCTTCTCTTTTATCCAGCTTCTGATCATCAAAGGTTAACTTCCTTGGTAACTCAATATGGCATTATCTACATCTTGGAGCTTGCCAAATACTATTACAATAACTCTCAGGCACATGTCAATGAGGAAGTTGCATATTTGCTGAAAGGGTTAAACTTTGTACATACATTTGTGTTCGAAAGAGATGTGTCATACGAGGAGTTTGTGAACAGAGTTTATCCTTTGGAGCAAATGCTTAGGTCAGAAGGACTTTGGGAAGTTCCTCACCCTTGGCTGAACCTCTGGGTTCCAAGATCTAGAATCTCAGATTTTGATGAAGGTGTTTTCAAGGACATTGTTCTTAAGCAAAATATTACTGGCGGAAGTTTTCTAGTCTACCCAACAAACAGAAGAAACAAGTGGGATGATAGGATGACACCAATTACACCTGACGAAGATGTTTTCTACGTTGTAGATTTTTTGCGTGTTGCTAAAACGTTTGATGTGGTGGAGAAACTACAGGTTCAAAACAAACAGATACTGCGGTTTTGTAATGATGCTGGTATTAAGATCACAGAGTATCTTATCGGGAACAAAACTCATCAACAATGGGTGGAACACTTTGGCCCAAAATGGAAACTTTTTGCAGATAGAAAAACTGAATTTGATCCCAAAAAAATATTGTCACCTGGACATGGGATTTTCCAGTAA 1584 0.4167 MPQRNLVLFSTTMVVLLLSSTVLTQAQPRSWTAFQASKELATKLSRNPQTFPHASTDYGHIVHKTPVAIFNPSSVSDILALIHFSNSLPNPFPIAPRGKAHSVHGQAMTKDGVVLNMTNLNSSFQNGLGVLVSACDGKGPLICYADVGGGQMWIDVLHASLERGLTPLSLTDYMYATVGGTLSNAGMGGMSFRFGPQISNVLELDVITGKGDLVTCSKEQNSEAFYAALGGLGQFGVITRARIPLGPAPTRVKWLRLLYNNFTAFSRDQEHLISFSERNDIATADYVEGMLLLNQPPLDLLFYPASDHQRLTSLVTQYGIIYILELAKYYYNNSQAHVNEEVAYLLKGLNFVHTFVFERDVSYEEFVNRVYPLEQMLRSEGLWEVPHPWLNLWVPRSRISDFDEGVFKDIVLKQNITGGSFLVYPTNRRNKWDDRMTPITPDEDVFYVVDFLRVAKTFDVVEKLQVQNKQILRFCNDAGIKITEYLIGNKTHQQWVEHFGPKWKLFADRKTEFDPKKILSPGHGIFQ* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0538 527 SUPERFAMILY FAD-linked oxidases, C-terminal domain 249 526 IPR016164 GO:0003824|GO:0050660
Gso9g0538 527 ProSiteProfiles PCMH-type FAD-binding domain profile. 62 248 IPR016166 GO:0071949
Gso9g0538 527 Gene3D - 117 250 IPR016169 -
Gso9g0538 527 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 526 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gso9g0538 527 Gene3D - 251 485 IPR016170 -
Gso9g0538 527 PANTHER GULONOLACTONE OXIDASE 11 527 - -
Gso9g0538 527 SUPERFAMILY FAD-binding/transporter-associated domain-like 44 247 IPR036318 GO:0050660
Gso9g0538 527 Pfam FAD binding domain 67 217 IPR006094 GO:0050660
Gso9g0538 527 Gene3D - 49 526 IPR016167 -
Gso9g0538 527 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 11 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0538 Gso-Chr9 6033304 6038431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0538 K00279 - gmx:100793158 1042.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0756 13 21871257 21876126 Gso9g0538 9 6033304 6038431 PCT
Gso17g0459 17 4152157 4156765 Gso9g0538 9 6033304 6038431 PCT
Gso9g0538 9 6033304 6038431 Gso13g0756 13 21871257 21876126 PCT
Gso9g0538 9 6033304 6038431 Gso17g0459 17 4152157 4156765 PCT