Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0529 ATGATGAAAAATATTGGGTTGTTTCTTCTTGTGGTGGTGGCTACTTTTGTGGTGGCAGCCACAGCTGGTAGCTTTTACCAAGACTTTGAAATAACATGGGGTGGTGAGCGTGCCAAAATCTATGAAAATGGAAATCTTCTCACCCTCTCCCTAGACAGAGCCTCTGGCTCTGGCTTTCGTTCCAAAAAAGAATACTTGTTCGGAAAAATTGACATGCAGCTCAAGCTCGTGCCTGGTAACTCTGCTGGAACAGTCACTGCCTATTATTTATCTTCTCTGGGGCCTACTCATGACGAAATAGACTTCGAGTTTTTGGGTAACTTGAGTGGTGATCCTTATACTCTCCACACGAACGTATTCAGCCAAGGGAAAGGGAACAGAGAACAACAGTTCCATCTATGGTTCGACCCCACCAAGGACTTCCACACATACTCCGTCCAATGGAATCCTGCAAGCATCATATTCTCTGTGGACGGGACACCAATAAGGGAGTTCAAGAATTTGGAGACAAAAGGGGTTCCTTTCCCAAAGAACCAACCCATGAGAATATACTCTAGCCTTTGGAACGCTGAGGATTGGGCCACAAGGGGTGGGCTTGTGAAAACGGATTGGAGCAAGGCCCCATTCACAGCCTCATACAGAAACTTCAATGCCCTAACCTCTTCCTCCACTGGCCAATCACTGGACGCCACGGGGCTGGCCAAGATCCATTGGGTGCAAAAGAATTACATGATTTACAACTATTGCACTGATATTAGACGTTTCCCACAAGGCCTCCCTCCAGAATGTTCCATTGCTTGA 801 0.4669 MMKNIGLFLLVVVATFVVAATAGSFYQDFEITWGGERAKIYENGNLLTLSLDRASGSGFRSKKEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYTLHTNVFSQGKGNREQQFHLWFDPTKDFHTYSVQWNPASIIFSVDGTPIREFKNLETKGVPFPKNQPMRIYSSLWNAEDWATRGGLVKTDWSKAPFTASYRNFNALTSSSTGQSLDATGLAKIHWVQKNYMIYNYCTDIRRFPQGLPPECSIA* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0529 266 Gene3D - 10 265 - -
Gso9g0529 266 PRINTS Glycosyl hydrolase family 16 signature 57 75 IPR008264 GO:0004553|GO:0005975
Gso9g0529 266 PRINTS Glycosyl hydrolase family 16 signature 115 128 IPR008264 GO:0004553|GO:0005975
Gso9g0529 266 PRINTS Glycosyl hydrolase family 16 signature 133 150 IPR008264 GO:0004553|GO:0005975
Gso9g0529 266 Pfam Glycosyl hydrolases family 16 26 206 IPR000757 GO:0004553|GO:0005975
Gso9g0529 266 CDD GH16_XET 23 263 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso9g0529 266 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 7 265 - -
Gso9g0529 266 PIRSF EndGlu_transf 218 266 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso9g0529 266 PIRSF EndGlu_transf 1 229 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso9g0529 266 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 265 IPR013320 -
Gso9g0529 266 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 223 263 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gso9g0529 266 ProSitePatterns Glycosyl hydrolases family 16 active sites. 99 109 IPR008263 GO:0004553|GO:0005975
Gso9g0529 266 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 265 IPR044791 GO:0004553
Gso9g0529 266 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 213 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0529 Gso-Chr9 5887935 5890065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0529 2 266 Glycoside Hydrolase AT4G25810 67.254 2.61e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0529 K14504 K08235 gmx:100778237 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1389 15 15143095 15145366 Gso9g0529 9 5887935 5890065 GST
Gso13g0744 13 21763051 21764760 Gso9g0529 9 5887935 5890065 PCT
Gso9g0529 9 5887935 5890065 Gso13g0744 13 21763051 21764760 PCT