Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0744 ATGGCAAGTGAGATATTTCTTGCCCTTCTGATCACAACCTTTGTGGTTGCAGCCTCTGCTGGTAACTTCAACCAAGACTTTGAGATAACATGGGGTGATGGTCGTGCCAAAATCCTCAATAGTGGGGAACTTCTCACCTTGTCCCTAGACAAGACCTCTGGCTCTGGATTTCGTTCTAGGAATGAGTACTTGTTTGGAAAAATTGACATGCAACTAAAACTCGTGCCTGGTAACTCTGCAGGCACAGTCACAGCTTATTATCTATCTTCTCTTGGGGATACTCATGATGAAATTGATTTTGAATTTCTGGGTAACTTGAGTGGTGATCCTTATATTCTTCATACAAACGTATTCACACAAGGGAAAGGTAACAGGGAACAGCAGTTCTATCTGTGGTTCGACCCCACCCAGGACTTCCACACATATTCCATTCTTTGGAATCCTCAGAGCATCATATTCTCTGTGGATGGGACACCCATAAGGGAGTTCAAGAATCTTGAATCAAAAGGGGTTTCTTTTCCCAAAAACCAACCCATGAGGATATATTCAAGCCTTTGGAACGCTGATGATTGGGCCACAAGGGGAGGCCTAGTGAAGACTGATTGGAGCCAAGCCCCATTCACAGCCTCTTACAGAAAGTTCAATGCCCAAGCATGTGTTTGGACTTCTTCTTCAGGCTCATCTTGCTCCTCCAACAATCCATCATCAAACCAAGCATGGTTGAAACAATCACTGGATTCAACAGGGCAAGCTAGGATTCAGTGGGTCCAAAAGAACTACATGATTTACAACTACTGCACTGACACTAAGCGTTTCCCACAGGGCCTTCCTCCTGAGTGCACAATCGCATGA 852 0.4472 MASEIFLALLITTFVVAASAGNFNQDFEITWGDGRAKILNSGELLTLSLDKTSGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGDTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTQDFHTYSILWNPQSIIFSVDGTPIREFKNLESKGVSFPKNQPMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRKFNAQACVWTSSSGSSCSSNNPSSNQAWLKQSLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECTIA* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0744 283 PRINTS Glycosyl hydrolase family 16 signature 55 73 IPR008264 GO:0004553|GO:0005975
Gso13g0744 283 PRINTS Glycosyl hydrolase family 16 signature 113 126 IPR008264 GO:0004553|GO:0005975
Gso13g0744 283 PRINTS Glycosyl hydrolase family 16 signature 131 148 IPR008264 GO:0004553|GO:0005975
Gso13g0744 283 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 282 IPR013320 -
Gso13g0744 283 Gene3D - 9 282 - -
Gso13g0744 283 PIRSF EndGlu_transf 1 283 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso13g0744 283 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 7 282 - -
Gso13g0744 283 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 17 211 IPR000757 GO:0004553|GO:0005975
Gso13g0744 283 ProSitePatterns Glycosyl hydrolases family 16 active sites. 97 107 IPR008263 GO:0004553|GO:0005975
Gso13g0744 283 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 282 IPR044791 GO:0004553
Gso13g0744 283 CDD GH16_XET 18 280 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso13g0744 283 Pfam Glycosyl hydrolases family 16 24 203 IPR000757 GO:0004553|GO:0005975
Gso13g0744 283 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 280 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0744 Gso-Chr13 21763051 21764760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0744 3 283 Glycoside Hydrolase AT4G25810 73.665 1.50e-156 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0744 K14504 - gmx:100807063 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0744 13 21763051 21764760 Gso15g1389 15 15143095 15145366 PCT
Gso13g0744 13 21763051 21764760 Gso9g0529 9 5887935 5890065 PCT
Gso15g1389 15 15143095 15145366 Gso13g0744 13 21763051 21764760 PCT
Gso9g0529 9 5887935 5890065 Gso13g0744 13 21763051 21764760 PCT