Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1389 ATGCACCTTAGTCTTCACCAAAATACTCCTCTTGGCATCTTGTGTTGTGTCCCTCTTTTAAGCTATTTCCTTCTCTTAACACAATTGGTTGTGCCAATTGCCATAGTCACCAACCAATTAACAAAGGTATATATATCATCATATCATCACCAAATGAAAAATATTGGGTTGTTTTTTCTTGTGGTGGTGGCTACTTTTGTGGTGGCAGCCACAGCTGGTAGCTTTTACCAAGACTTTGAAATAACGTGGGGTGGTGAGCGTGCCAAAATCTATGAGAATGGAAACCTTCTCACACTCTCCCTTGACAGAGCCTCTGGCTCTGGCTTTCGTTCCAAAAAAGAGTACTTGTTCGGAAAAATTGACATGCAGCTCAAGCTTGTGCCTGGTAACTCTGCTGGAACAGTAACTGCCTATTATTTATCTTCTCTGGGGCCTACTCATGACGAAATAGACTTTGAGTTTTTGGGTAACTTGAGTGGTGATCCTTACACTCTCCACACGAACGTATTCAGCCAAGGGAAAGGGAACAGAGAACAACAGTTCCATCTATGGTTCGACCCCACCAAGGACTTCCACACATACTCCGTCCAATGGAATCCTGCAAGCATCATATTCTCTGTGGACGGGACCCCAATAAGGGAGTTCAAGAATTTGGAGACAAAAGGGGTTCCATTCCCAAAGAGCCAACCCATGAGAATATACTCTAGTCTTTGGAACGCTGAGGATTGGGCCACAAGGGGTGGCCTTGTGAAAACGGATTGGAGCAAGGCCCCATTCACAGCCTCATACAGAAACTTCAATTCCCAAACTTCTTCCTCCACTGGCCAATCACTGGACGCCACGGGGCAGGCAAAGATCCGTTGGGTGCAAAAGAATTACATGATTTACAATTATTGCACTGATATCAGACGTTTCCCTCAAGGCCTTCCTCCAGAATGCTCCATTGCATGA 951 0.4511 MHLSLHQNTPLGILCCVPLLSYFLLLTQLVVPIAIVTNQLTKVYISSYHHQMKNIGLFFLVVVATFVVAATAGSFYQDFEITWGGERAKIYENGNLLTLSLDRASGSGFRSKKEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYTLHTNVFSQGKGNREQQFHLWFDPTKDFHTYSVQWNPASIIFSVDGTPIREFKNLETKGVPFPKSQPMRIYSSLWNAEDWATRGGLVKTDWSKAPFTASYRNFNSQTSSSTGQSLDATGQAKIRWVQKNYMIYNYCTDIRRFPQGLPPECSIA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1389 316 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 56 315 - -
Gso15g1389 316 Pfam Glycosyl hydrolases family 16 76 256 IPR000757 GO:0004553|GO:0005975
Gso15g1389 316 ProSitePatterns Glycosyl hydrolases family 16 active sites. 149 159 IPR008263 GO:0004553|GO:0005975
Gso15g1389 316 PIRSF EndGlu_transf 40 279 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso15g1389 316 PIRSF EndGlu_transf 269 316 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso15g1389 316 CDD GH16_XET 73 313 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso15g1389 316 Gene3D - 60 315 - -
Gso15g1389 316 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 273 313 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gso15g1389 316 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 56 315 IPR044791 GO:0004553
Gso15g1389 316 PRINTS Glycosyl hydrolase family 16 signature 107 125 IPR008264 GO:0004553|GO:0005975
Gso15g1389 316 PRINTS Glycosyl hydrolase family 16 signature 165 178 IPR008264 GO:0004553|GO:0005975
Gso15g1389 316 PRINTS Glycosyl hydrolase family 16 signature 183 200 IPR008264 GO:0004553|GO:0005975
Gso15g1389 316 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 69 263 IPR000757 GO:0004553|GO:0005975
Gso15g1389 316 SUPERFAMILY Concanavalin A-like lectins/glucanases 75 315 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1389 Gso-Chr15 15143095 15145366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1389 60 316 Glycoside Hydrolase AT4G25810 69.203 1.25e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1389 K14504 K08235 gmx:732603 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1389 15 15143095 15145366 Gso9g0529 9 5887935 5890065 GST
Gso13g0744 13 21763051 21764760 Gso15g1389 15 15143095 15145366 PCT
Gso15g1389 15 15143095 15145366 Gso13g0744 13 21763051 21764760 PCT