Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0487 ATGGCAACTGAGAGTCTGATTAGAATCTCGGAAGCTGGGGGTAAATGGCCTTCTCACAAGGAAGCTGCAGCTTTTGGTTCATCGTCTCGTAACATGGCGACGGAGGATTTGGGTATACTTCTGAAGGGCCATAGGTTCCAAGGTGGTGGAAAGGATGCGGCACCCAATCGCAGTGGCAGTGCACCTCCCAGCATTGAAGGCTCATTTCTGGCCATAGAAAACCTTTTACCCCAGCATAACACCGCCCAGAATGCAAGCTTTGCAAATCTAAGCAGCACTATGCAAAATTGCGAGTCTGAAGAACAATTGCGAGCTGATCCAGCTTATTTGGCATATTACAATTCCAATGTCAACCTAAACCCTAGACTTTCTCCCCCGCTTACGTCCTGGGAAAATCGCCATCTGGGACGACATATTGGCAGTTTTAGAAATAATTGGAGAATGTCTTCTGCAGATGATAGCGGTAAAAGTTCTGTACATTTGACTCAAAGGACTCTTTCCACACACAAGGAGGAGTCTGAAGATGATTCAGCCCAACAGCCATATGACGATGAATTAGTTAAGGCAAGTGGAATATGGCGTAGACCTGATGCAACTTCATTGGCATCTCAGCACAAAAATATGGTTGATTTAATTCAGGAAGATTTTCCACGCACCATGTCGCCTGTATATAATAAGTCTCTTTCTGTAAGTCACGGACTAGCAGATAAACCAATTGATTTAGATGCTGGTTCTAGCTCTTCTCATGGCCCCTCTGTTACTACAATAGAGGCTGGTAAACATACTGTAGGTGCAGATGACATAAGGGTGTCATCAAGTGTCGATACCCATGCCCCAGTTGCAAGCTCATCATCTCTTGAATCCACTGGCAGCATTGGTGTTACTGACTTAGACATTGCAACTGTTGAGTATCAACTAAAGGCTCTTGGTGTATCTAATGCACCAAATTCAGAAAGTCTGAGTTACAAAGAGAAATGGAAGACCGGCTACCAGAACAATTTGATGCAACGCCAGGGATTCCAGCAACAAAACAATCCATATGATGTTCCTAGTGCCAACTCTCAAAATGTAAATTCTGTGTATGCTGGTAGGGAACAATTTCCTTTTAATTCCAACAAGTTCTCCAATGTCCAGCCACTACTGCAGTCATCTGGTTTTACACCTCCCCTATATGCCACAGCAGCTGCTTATATGTCCTCAGCCAATCCATTTTACACTAATATGCAGGCGTCAGGTATATATACTCCACAATATGTTGGCGGATACACTGTAAATCCCACAGCTTTTCCTCCATATGTTACTGCTTATCCTCCTCATGGTGCTGTACCTCTTGTCATTGATGGAGCTACTAGCTCCAGTTATACTCCACTAACACCGGGGGTTTCAATTGGGGGAAACATTTCGCATGGAGCTGAAATGGTACAGACAAACAAGTACCTTGGGCAATTTGGATTTCCTCCACAGCCTTCTTTTGGTGATCCTATGTACATGCAATATCATCAGCAACCTTTTGTGGAGGGATATGGTATTTCTGGTCATTTTGATCCACTGGCACCTAGAGCAAGTGGTGTTAGCCAAATTAGTCCTTATGATTCGCAAAAAAGGCCCAGTACTGGTGCTTATTTGGATGATAAAAAATTACCTGATCAGAGAACTGCTGCTAATATGACCTCTAGAAGAGGTGGAGTATCAATTCCTAGTTATTTTGGACACATGCCAAACATGGGTTTTGTAATGCAGCATCCGAGTTCACCACTTCCTAGTCCAGTTTTATCTGGATACCCAGAAGGAAGTCCAGGCCTTCCAGGAGTTAGGAATGAAATAAATCTTTCCCCGGCTTCTGGAAGAAATGGAGGCATAATATCTGGATGGCAAGTTCAGAGATCTTTTGACAGTGCTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAAGTCGAAGATTTGAACTATCTGATATTATTGGACATATTGTTGAATTTAGCTCTGATCAGCATGGGAGTCGATTTATACAGCAGAAGTTGGAAAGTTGTAGTGTCGAAGAGAAGACATTAGTGTTTAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTTTTTGGTAACTACGTAATACAGAAGTTTTTTGAGTATGGAAGCCCAGAGCAGAGGAGAGAACTTGCAGATCGACTTGTTGGCCAGATACTGCCTTTAAGTTTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTAATGAGATGTGTTCGTGATCAAAATGGTAACCATGTTATTCAAAAGTGCATTGAATCTATTCCAACCAAAAAGATTAGCTTTATACTATCTGCATTTCGTGGTCAAGTTGCTACTCTATCAATGCATCCTTATGGATGCCGAGTCATGCAGAGAGTTCTAGAACATTGCACAGACGAGAGTCAATGCCAGTTTATTGTAGATGAAATCTTGGAGTCAGTCTGTGCTCTTGCTCAGGATCAGTATGGTAATTATGTTACACAGCATGTCTTGGAGAGAGGAAAGCCTCAAGAAAGGAGTCAAATTATCAACAAGTTGTCAGGACATATTGTTCAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAAAAATGTTTGGAGTATGGTGATACCACCGAACGGGAGTTGCTAGTTGCAGAGATATTTGGGCATGATGAAAAATGTGATAATTTATTGACAATGATGAAAGATCAATTTGCGAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAATCAGCGAGCAATGTTGCTTTCTCACGTAAGAATTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGAGAATCAAACACCCAGCTCATGA 2958 0.4175 MATESLIRISEAGGKWPSHKEAAAFGSSSRNMATEDLGILLKGHRFQGGGKDAAPNRSGSAPPSIEGSFLAIENLLPQHNTAQNASFANLSSTMQNCESEEQLRADPAYLAYYNSNVNLNPRLSPPLTSWENRHLGRHIGSFRNNWRMSSADDSGKSSVHLTQRTLSTHKEESEDDSAQQPYDDELVKASGIWRRPDATSLASQHKNMVDLIQEDFPRTMSPVYNKSLSVSHGLADKPIDLDAGSSSSHGPSVTTIEAGKHTVGADDIRVSSSVDTHAPVASSSSLESTGSIGVTDLDIATVEYQLKALGVSNAPNSESLSYKEKWKTGYQNNLMQRQGFQQQNNPYDVPSANSQNVNSVYAGREQFPFNSNKFSNVQPLLQSSGFTPPLYATAAAYMSSANPFYTNMQASGIYTPQYVGGYTVNPTAFPPYVTAYPPHGAVPLVIDGATSSSYTPLTPGVSIGGNISHGAEMVQTNKYLGQFGFPPQPSFGDPMYMQYHQQPFVEGYGISGHFDPLAPRASGVSQISPYDSQKRPSTGAYLDDKKLPDQRTAANMTSRRGGVSIPSYFGHMPNMGFVMQHPSSPLPSPVLSGYPEGSPGLPGVRNEINLSPASGRNGGIISGWQVQRSFDSAHDPKIVNFLEDLKSGKSRRFELSDIIGHIVEFSSDQHGSRFIQQKLESCSVEEKTLVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKISFILSAFRGQVATLSMHPYGCRVMQRVLEHCTDESQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERSQIINKLSGHIVQLSQHKFASNVVEKCLEYGDTTERELLVAEIFGHDEKCDNLLTMMKDQFANYVVQKVIDICSENQRAMLLSHVRIHAHALKKYTYGKHIVARLEHQFGENQTPSS* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0487 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 765 800 IPR001313 GO:0003723
Gso9g0487 985 SMART pum_5 916 951 IPR001313 GO:0003723
Gso9g0487 985 SMART pum_5 838 873 IPR001313 GO:0003723
Gso9g0487 985 SMART pum_5 729 764 IPR001313 GO:0003723
Gso9g0487 985 SMART pum_5 693 728 IPR001313 GO:0003723
Gso9g0487 985 SMART pum_5 801 837 IPR001313 GO:0003723
Gso9g0487 985 SMART pum_5 765 800 IPR001313 GO:0003723
Gso9g0487 985 SMART pum_5 874 909 IPR001313 GO:0003723
Gso9g0487 985 SMART pum_5 657 692 IPR001313 GO:0003723
Gso9g0487 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 693 728 IPR001313 GO:0003723
Gso9g0487 985 MobiDBLite consensus disorder prediction 521 544 - -
Gso9g0487 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 838 873 IPR001313 GO:0003723
Gso9g0487 985 SUPERFAMILY ARM repeat 641 974 IPR016024 -
Gso9g0487 985 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 637 977 IPR033133 GO:0003723
Gso9g0487 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 801 837 IPR001313 GO:0003723
Gso9g0487 985 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 978 - -
Gso9g0487 985 CDD Pumilio 652 973 IPR033712 GO:0003723
Gso9g0487 985 MobiDBLite consensus disorder prediction 240 261 - -
Gso9g0487 985 Pfam Pumilio-family RNA binding repeat 733 766 IPR001313 GO:0003723
Gso9g0487 985 Pfam Pumilio-family RNA binding repeat 698 729 IPR001313 GO:0003723
Gso9g0487 985 Pfam Pumilio-family RNA binding repeat 843 875 IPR001313 GO:0003723
Gso9g0487 985 Pfam Pumilio-family RNA binding repeat 661 695 IPR001313 GO:0003723
Gso9g0487 985 Pfam Pumilio-family RNA binding repeat 776 799 IPR001313 GO:0003723
Gso9g0487 985 Pfam Pumilio-family RNA binding repeat 920 952 IPR001313 GO:0003723
Gso9g0487 985 Pfam Pumilio-family RNA binding repeat 878 911 IPR001313 GO:0003723
Gso9g0487 985 Pfam Pumilio-family RNA binding repeat 805 840 IPR001313 GO:0003723
Gso9g0487 985 PANTHER PUMILIO HOMOLOG 5 45 978 - -
Gso9g0487 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 657 692 IPR001313 GO:0003723
Gso9g0487 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 910 951 IPR001313 GO:0003723
Gso9g0487 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 729 764 IPR001313 GO:0003723
Gso9g0487 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 874 909 IPR001313 GO:0003723
Gso9g0487 985 Gene3D - 638 982 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0487 Gso-Chr9 5169785 5177867 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0487 K17943 - gmx:100811036 1980.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1346 15 14149803 14158310 Gso9g0487 9 5169785 5177867 GST
Gso13g0712 13 21369161 21377568 Gso9g0487 9 5169785 5177867 PCT
Gso9g0487 9 5169785 5177867 Gso13g0712 13 21369161 21377568 PCT