Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0712 ATGGCAACTGAGAGTCCAATTAGAATCTCTGAAGCTGGGAGTAAATGGCCGTCTCTTAAGGAAGCTGCAACTTTTGGCTCGCCATCCCGTCACATGGCAACAGAGGATCTGGGTATATTTTTAAATGGCCATAGGTTTCATGGCAGTGGAAAGGATGCAGTACCCAACCGCAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCTGGCCATAGAAAACTTGTTATCCCAGAACACCACCAGGAATGCGAGCTTGGGATCTCGGAACAGAGCTATGCAAAAATATGATAGTGGTAAAGGGTCTTTTCATTTGTCACAAGGAACTCTTGCAACACACAAGGAGGAGTCTGAGGATGATTTGACCCAAAAGCTGTATAATAATTTGTTAGACAAAGCTAGTGGAAAATGGCATAGACAGGATGCGGCTTCAACATCATCTCAGGACACAAATTTAGTACTGGAAGATTTTCCCCATATCATGTCACCTGTATATAATAAGTCTCTTGGAGTGGTGGATGAACTAATTGATGTGGATACTGGTTCCAGTTCTTCTCTTGGCCCTCCTGTCACCACAGTGGATGCTGTAAAACCTACCATAGGTGCAGATGATGTAAGGCTGTCATCAACTGTTGATTCCCGTGCCCCTGTCACAAGCTCATCATCTCTCAATTCCACTGGAAGCATGGGATTTAATGTCTTAGATGTTACAATTGTAGAATCTCAATTAAGGGCTCTCAATGTATCTAATCTACCAAATTCAGAAAGCCAGAGTTATGAAGATAAATGGAAGAACAGCTGCCAGAATAATTTGATGCAACACCAGCAACAAAACTATCCATGTGTGGTGCCTAACACCAATTCTCAAAGTGAAAAATGCACATATGTTGGTATGGAGCAGTTTCTTCACAATCCCAGCAAGTTCTCCTCTGATGTCCAGCCTGTACTGCAATCATCAGGGTATACGCCTCCACTATATGCTACAGCAGCAGCAGCTTATATGACCTCAGCAAATCCATTTTACACTAATTTGCAGGCTTTGGGTATATATTCTCCGCAATATATAGGTGCATACCCTTTTAGTCCCACAGCTGTTCCTCCATATATTGCTGCATACCCTCCTCATGGTTCTGTACCACTTGTTGACGGGGCTACTGGTTCTAGTTTTACTCCCCAAGCACCAGGGATTTCTTCTACTGCAGGAAACATTTCACACGGAGCTGAAATGATGCATGCAAACAAGTTTTTTGGACAATTTGGATTTCCTCTGCAGCCTTCTTTTAGTGATCCTATTTACATGCAATATCATCAACAACCTTTTGTGGAGGGATATGGTGTATCTGCTCATCTGCTGGCACCTAGAGCCAGTGTTGGCGGCCAAATTGGTCCCTTTGATTCCCAAAAAAGGCCCAATAGTGGTGCTTACTTGGATGACAAAAAATTACATAATCAGAAAACTGGTGCTAATTTGAATTCTAATAGAGATGGGCTAATACACCCTGGTTATTTTGGACACCCTTCAAATTTGGGTTTTGTACCCCAGTATCCAAGTTCCCCACTTTGTAGACCAGTTTTATCAGGATACCCAGAAAGTAGTCCTGGCCTTCTAGGTGGAAGGAATGAAATGAAACGCTCTCCAGCTTCTGGTAGAAATGGAGGTTTATTATCTGGATGGCAAGGTCAAAGAGCCTTTGACAGTGCTCACGACCCCAAAATTGCTATTTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCCGATATTATTGGACATATAGTTGAATTTAGCACTGATCAGCATGGGAGCCGTTTTATACAGCAGAAGTTGGAAAGCTGTGGCGTTGAAGAGAAGGAATTAGTATTCAAAGAGGTTCTTCCACATACTTCAAAATTAATAACTGATGTATTTGGCAACTATGTAATCCAAAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGAAAGGAACTTGCAAATCGACTTCTTGGCCAGATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATCGATCTTGAACAGAAAGCTCAACTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTCCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTAAAAACATTGACTTTATAATATCTGCATTTCGTGGTCAAATTGCTCTTCTATCTATGCATCCATATGGTTGCCGAGTCATACAGAGAGTTCTAGAGCATTGTTCAAATGAGGTTCAATGTCAGTTTATTGTTGATGAAATCTTGGAGTCAGTTTTTACTCTTGCTCAGGACCAGTATGGGAATTATGTTACGCAGCATGTGTTGGAGAGAGGAAAGCCTCAGGAAAGGAGTCAAATTATTCACAAGCTATCTGGACATATTTTCCAATTAAGCCAGCATAAATTTGCATCAAATGTTGTTGAGAAATGTTTGGAGTATGGTGATGCTACTGATCGGCAGTTGTTAATTGCGGAGATTGTTGGACATGACAAACAAAATGATAATTTATTGAGAACCAAACAAATGGATCATGATGACAATAAAGGTCTTGCGCAATGCTTCCATGCAAGCACAACTAGTATTTCTGTGTTACAGGAGACAGATGAGATATTGGATCTTTGGGCTTTTCCCATTGAAAAAACGAATGCTACTGTGGCTTCATATCTGATAGTTCCGACATTCATGGCTTCAAGAAACATCAGTGTATGCATACATGTTGTGCACTTAATGTAA 2790 0.4125 MATESPIRISEAGSKWPSLKEAATFGSPSRHMATEDLGIFLNGHRFHGSGKDAVPNRSGSAPPSMEGSFLAIENLLSQNTTRNASLGSRNRAMQKYDSGKGSFHLSQGTLATHKEESEDDLTQKLYNNLLDKASGKWHRQDAASTSSQDTNLVLEDFPHIMSPVYNKSLGVVDELIDVDTGSSSSLGPPVTTVDAVKPTIGADDVRLSSTVDSRAPVTSSSSLNSTGSMGFNVLDVTIVESQLRALNVSNLPNSESQSYEDKWKNSCQNNLMQHQQQNYPCVVPNTNSQSEKCTYVGMEQFLHNPSKFSSDVQPVLQSSGYTPPLYATAAAAYMTSANPFYTNLQALGIYSPQYIGAYPFSPTAVPPYIAAYPPHGSVPLVDGATGSSFTPQAPGISSTAGNISHGAEMMHANKFFGQFGFPLQPSFSDPIYMQYHQQPFVEGYGVSAHLLAPRASVGGQIGPFDSQKRPNSGAYLDDKKLHNQKTGANLNSNRDGLIHPGYFGHPSNLGFVPQYPSSPLCRPVLSGYPESSPGLLGGRNEMKRSPASGRNGGLLSGWQGQRAFDSAHDPKIAIFLEELKSGKGRRFELSDIIGHIVEFSTDQHGSRFIQQKLESCGVEEKELVFKEVLPHTSKLITDVFGNYVIQKFFEYGSPEQRKELANRLLGQILPLSLQMYGCRVIQKALEVIDLEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFIISAFRGQIALLSMHPYGCRVIQRVLEHCSNEVQCQFIVDEILESVFTLAQDQYGNYVTQHVLERGKPQERSQIIHKLSGHIFQLSQHKFASNVVEKCLEYGDATDRQLLIAEIVGHDKQNDNLLRTKQMDHDDNKGLAQCFHASTTSISVLQETDEILDLWAFPIEKTNATVASYLIVPTFMASRNISVCIHVVHLM* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0712 929 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 52 879 - -
Gso13g0712 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 591 626 IPR001313 GO:0003723
Gso13g0712 929 CDD Pumilio 586 856 IPR033712 GO:0003723
Gso13g0712 929 Gene3D - 573 884 IPR011989 -
Gso13g0712 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 663 698 IPR001313 GO:0003723
Gso13g0712 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 735 771 IPR001313 GO:0003723
Gso13g0712 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 699 734 IPR001313 GO:0003723
Gso13g0712 929 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 52 879 - -
Gso13g0712 929 Pfam Pumilio-family RNA binding repeat 634 663 IPR001313 GO:0003723
Gso13g0712 929 Pfam Pumilio-family RNA binding repeat 710 734 IPR001313 GO:0003723
Gso13g0712 929 Pfam Pumilio-family RNA binding repeat 777 809 IPR001313 GO:0003723
Gso13g0712 929 Pfam Pumilio-family RNA binding repeat 667 700 IPR001313 GO:0003723
Gso13g0712 929 Pfam Pumilio-family RNA binding repeat 739 774 IPR001313 GO:0003723
Gso13g0712 929 Pfam Pumilio-family RNA binding repeat 812 845 IPR001313 GO:0003723
Gso13g0712 929 Pfam Pumilio-family RNA binding repeat 595 629 IPR001313 GO:0003723
Gso13g0712 929 SUPERFAMILY ARM repeat 586 856 IPR016024 -
Gso13g0712 929 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 571 917 IPR033133 GO:0003723
Gso13g0712 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 772 807 IPR001313 GO:0003723
Gso13g0712 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 627 662 IPR001313 GO:0003723
Gso13g0712 929 SMART pum_5 808 843 IPR001313 GO:0003723
Gso13g0712 929 SMART pum_5 735 771 IPR001313 GO:0003723
Gso13g0712 929 SMART pum_5 699 734 IPR001313 GO:0003723
Gso13g0712 929 SMART pum_5 627 662 IPR001313 GO:0003723
Gso13g0712 929 SMART pum_5 772 807 IPR001313 GO:0003723
Gso13g0712 929 SMART pum_5 663 698 IPR001313 GO:0003723
Gso13g0712 929 SMART pum_5 591 626 IPR001313 GO:0003723
Gso13g0712 929 ProSiteProfiles Pumilio RNA-binding repeat profile. 808 843 IPR001313 GO:0003723
Gso13g0712 929 MobiDBLite consensus disorder prediction 461 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0712 Gso-Chr13 21369161 21377568 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0712 K17943 - gmx:100819166 1843.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0712 13 21369161 21377568 Gso15g1346 15 14149803 14158310 PCT
Gso13g0712 13 21369161 21377568 Gso9g0487 9 5169785 5177867 PCT
Gso15g1346 15 14149803 14158310 Gso13g0712 13 21369161 21377568 PCT
Gso9g0487 9 5169785 5177867 Gso13g0712 13 21369161 21377568 PCT