Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1346 ATGGCAACTGAGAGTCCAATTAGAATCTCAGAAGCTGGTGGTAAATGGCCGTCTCATAAGGAAGCTGCAGCTTTTGGTTCACTGTCTCGTAACATGGCAACAGAGGATTTGGGTATACTTCTGAAGGGCCATAGGTACCAGGGTGGTGGAAAGGATGTGGCACCCAATCGCAGTGGCAGTGCACCTCCCAGCATTGAAGGCTCATTTCTGGCCATAGAAAACCTTTTACCCCAGCATAACACCACCCAGAATGCAAGCTTTGCCAACCTAAGCAGCGCTATGCAAAATTGTGAGTCTGAAGAACAATTGCGAGCTGATCCAGCTTATTTGGCATATTACAATTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCGCTTACATCCTGGGAAAATCGCCATCTAGGACGTCATATTATCAGTTTTAGAAATAATTGGAGAATGTCTACTACGGATGATAGTGGTAAAAGTTCTTTACATTTGCCTCAAAGGACTCTTTCCACGCACAAGGAGGAGTCTGAAGATGATTCACCCCAACAGCCATATGATCATGAATTAGTTAAGGCAAGTGGAATTTGGCGTAGTCCTGATGCAGCTTCATTGGCATCTCAGCACAAAAATATGGTTGACTTAATTCAGGAAGATTTTCCTCGCACCATGTCACCTGTATATAATAAGTCTCTTTCTGTAAGTCACGGACTAGTGGATAAACCGATTGATTTAGAAGCTGGTTCTAGTTCTTCTCATGGCCCCCCTGTTACTACAATAAAGGCTGGTAAACCTACTATAGGTGCAGATGACATAAGGGTGTCATCAAGTGTCGATACCCATGCCCCAGTTGCAAGCTCATCATCTCTTGAATCCACTGGCAGCATTGGTGTTAGTGACATTGCAACTGTTGAGTCTCAACTAAAGGCTCTTGGTGTATCTAATGTACCAAATTCAGAAAGTCTGAGTTACGAAGAAAAATGGAAGGCAAGCTACCAGAACAATTTGATGCGACACCCGGGATTCCAGCAACAAAACAATCCATATGATGTTCCTAGTGCCAATTCTCAAAATTTAAATTCTGTGTACGTTGGTAGGGAACAATTTCCTTTTAATTCCAGCAAGTTCTCCAATGTCCAGCCACTACTGCAGTCATCTGGTTTTACACCTCCCCTATATGCCACAGCAGCTGCTTATATGTCCTCAGCCAATCCATTTTACACTAATATGGAGGCGTCAGGTATATATACTCCACAATATGTTGGTGGATACACTGTAAATCCCACAGCTTTTCCTCCATATACTGCATACCCTCCTCATGGTGTTCTACCTCTTGTCGTTGATGGAGCTACTAGTTCCAATTATACTCCACTAACACCGGGGGTTTCAATTGGGGGAAACATTTCGCATGGAGCTGAGATGGTACAGACAAACAAGTACCTTGGGCAATTTGGATTTCCTCCGCAGCCTTCTTTTGGTGATCCTATGTACATGCAATATCATCAGCAACCTTTTGTGGAAGGATATGGTATTTCTGGTCATTTTGATCCACTGGCACCTAGAGCAAGTGGTGTTAGCCAAATTAGTCCTTATGATTCGCAAAAAAGGTCCAGTACTGGTGCTTATTTGGATGATAAAAAATTAACTGATCAGAGAACTTCTGCTAATATGAACTCAAGAAGAGGTGGAGTATCGATTCCTAGTTATTTTGGACACATGCCAAACATGGGTTTTGTAATGCAGTATCCGAGTTCACCACTTCCTAGTCCAGTTTTATCAGGATACCCAGAAGGAAGTCCTGGCCTTCCAGGAGTTAGGAATGAAATAAAACTTTCCCCTGCTTCTGGAAGAAATGGAGGCGTAATATCTGGATGGCAAGGTCATAGATCTTTTGACAGTGCTCATGACCCCAAAATGGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAGGTCGAAGATTTGAGCTATCCGATATTATTGGACATATTGTTGAATTTAGCTCTGATCAGCATGGAAGTCGATTTATACAGCAGAAGTTGGAAAGTTGTAGTGGCGAAGAGAAGGCATTGGTGTTTAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTTGGTAACTACGTAATACAGAAGTTTTTTGAGTATGGAAGCTCGGAGCAGAGGAGGGAACTTGCAGATCGACTTGTTGGCCAGATACTGCCTTTGAGTTTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGATCAAAATGGTAACCATGTTATTCAAAAGTGCATTGAATCTATTCAAACCAAAAAGATTAGCTTTATACTATCTGCATTTCGTGGTCAAGTTGCTACTCTATCAATGCATCCCTATGGATGCCGAGTCATACAGAGAGTTCTAGAACATTGCATGGACGAGAGTCAATGCCAGTTTATTGTAGATGAAATCTTAGAGTCAGTTTGTGCTCTTGCTCAGGACCAGTATGGTAATTATGTTACACAGCATGTCTTGGAGAGAGGAAAGCCTCAGGAAAGGAGCCAAATTCTCAGCAAGTTGTCAGGACATATTGTTCAATTAAGCCAGCATAAATTTGCTTCAAATGTGGTAGAAAAATGTTTGGAGTATGGTGATGCCACTGAACGGGAGTTGCTAGTTGCAGAGATATTTGGGCATGATGACCAATGTGATAATTTATTGACAATGATGAAAGATCAATTTGCGAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAATCAGCGAGCAATGTTGCTTTCTCACGTAAGAATCCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGAGAATCAAACACCCAGCTCATGA 2949 0.4181 MATESPIRISEAGGKWPSHKEAAAFGSLSRNMATEDLGILLKGHRYQGGGKDVAPNRSGSAPPSIEGSFLAIENLLPQHNTTQNASFANLSSAMQNCESEEQLRADPAYLAYYNSNVNLNPRLPPPLTSWENRHLGRHIISFRNNWRMSTTDDSGKSSLHLPQRTLSTHKEESEDDSPQQPYDHELVKASGIWRSPDAASLASQHKNMVDLIQEDFPRTMSPVYNKSLSVSHGLVDKPIDLEAGSSSSHGPPVTTIKAGKPTIGADDIRVSSSVDTHAPVASSSSLESTGSIGVSDIATVESQLKALGVSNVPNSESLSYEEKWKASYQNNLMRHPGFQQQNNPYDVPSANSQNLNSVYVGREQFPFNSSKFSNVQPLLQSSGFTPPLYATAAAYMSSANPFYTNMEASGIYTPQYVGGYTVNPTAFPPYTAYPPHGVLPLVVDGATSSNYTPLTPGVSIGGNISHGAEMVQTNKYLGQFGFPPQPSFGDPMYMQYHQQPFVEGYGISGHFDPLAPRASGVSQISPYDSQKRSSTGAYLDDKKLTDQRTSANMNSRRGGVSIPSYFGHMPNMGFVMQYPSSPLPSPVLSGYPEGSPGLPGVRNEIKLSPASGRNGGVISGWQGHRSFDSAHDPKMVNFLEDLKSGKGRRFELSDIIGHIVEFSSDQHGSRFIQQKLESCSGEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSSEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIQTKKISFILSAFRGQVATLSMHPYGCRVIQRVLEHCMDESQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERSQILSKLSGHIVQLSQHKFASNVVEKCLEYGDATERELLVAEIFGHDDQCDNLLTMMKDQFANYVVQKVIDICSENQRAMLLSHVRIHAHALKKYTYGKHIVARLEHQFGENQTPSS* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1346 982 Gene3D - 634 979 IPR011989 -
Gso15g1346 982 MobiDBLite consensus disorder prediction 150 182 - -
Gso15g1346 982 MobiDBLite consensus disorder prediction 242 261 - -
Gso15g1346 982 CDD Pumilio 649 970 IPR033712 GO:0003723
Gso15g1346 982 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 975 - -
Gso15g1346 982 MobiDBLite consensus disorder prediction 165 182 - -
Gso15g1346 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 907 948 IPR001313 GO:0003723
Gso15g1346 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 726 761 IPR001313 GO:0003723
Gso15g1346 982 MobiDBLite consensus disorder prediction 519 556 - -
Gso15g1346 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 835 870 IPR001313 GO:0003723
Gso15g1346 982 Pfam Pumilio-family RNA binding repeat 773 795 IPR001313 GO:0003723
Gso15g1346 982 Pfam Pumilio-family RNA binding repeat 802 837 IPR001313 GO:0003723
Gso15g1346 982 Pfam Pumilio-family RNA binding repeat 917 949 IPR001313 GO:0003723
Gso15g1346 982 Pfam Pumilio-family RNA binding repeat 695 726 IPR001313 GO:0003723
Gso15g1346 982 Pfam Pumilio-family RNA binding repeat 875 908 IPR001313 GO:0003723
Gso15g1346 982 Pfam Pumilio-family RNA binding repeat 840 872 IPR001313 GO:0003723
Gso15g1346 982 Pfam Pumilio-family RNA binding repeat 730 763 IPR001313 GO:0003723
Gso15g1346 982 Pfam Pumilio-family RNA binding repeat 658 692 IPR001313 GO:0003723
Gso15g1346 982 SMART pum_5 913 948 IPR001313 GO:0003723
Gso15g1346 982 SMART pum_5 726 761 IPR001313 GO:0003723
Gso15g1346 982 SMART pum_5 690 725 IPR001313 GO:0003723
Gso15g1346 982 SMART pum_5 871 906 IPR001313 GO:0003723
Gso15g1346 982 SMART pum_5 762 797 IPR001313 GO:0003723
Gso15g1346 982 SMART pum_5 835 870 IPR001313 GO:0003723
Gso15g1346 982 SMART pum_5 654 689 IPR001313 GO:0003723
Gso15g1346 982 SMART pum_5 798 834 IPR001313 GO:0003723
Gso15g1346 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 798 834 IPR001313 GO:0003723
Gso15g1346 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 654 689 IPR001313 GO:0003723
Gso15g1346 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 762 797 IPR001313 GO:0003723
Gso15g1346 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 871 906 IPR001313 GO:0003723
Gso15g1346 982 PANTHER PUMILIO HOMOLOG 5 45 975 - -
Gso15g1346 982 ProSiteProfiles Pumilio RNA-binding repeat profile. 690 725 IPR001313 GO:0003723
Gso15g1346 982 MobiDBLite consensus disorder prediction 150 164 - -
Gso15g1346 982 SUPERFAMILY ARM repeat 638 971 IPR016024 -
Gso15g1346 982 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 634 974 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1346 Gso-Chr15 14149803 14158310 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1346 K17943 - gmx:100780168 1959.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1346 15 14149803 14158310 Gso9g0487 9 5169785 5177867 GST
Gso13g0712 13 21369161 21377568 Gso15g1346 15 14149803 14158310 PCT
Gso15g1346 15 14149803 14158310 Gso13g0712 13 21369161 21377568 PCT