Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0273 ATGACGATGGCGATGACGGCGTCGCAGTTGCGGTGCGGTTGGGGGTGGAGGCCAACGCCGAATCAGCAGCAGCAACGACGTCGTATGGTTCCGGTGGTGTGTTCCATCGCTATAGAGAACGCGAAGAACAAAGAGAGAGCGAAACTGAAGAAGCTCTTCGATGAAGCGTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTTTCCTTCACTCTCCAACAATTCACCGACGCTCTCGACAAGTACGACTTCAACGCCGAAATGGGCACCAAGGTTAAGGGCACTGTTTTTGCCACGGATAACAATGGAGCTTATGTTGACATTACTGCTAAGTCCACGGCCTACTTGCCTCTGCATGAGGCTTGCATCCACAGAATTAAGAATGTGGAAGAAGCAGGCATAATTCCTGGCGTGAGAGAGGAATTTATGATCATTGATGAGAATCAAGCGGATGATACCTTGATCTTGAGTTTGAGGTCTATCCAATATGACATTGCGTGGGAACGCTGTAGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGGTTGTTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGAAATCAGCTGGAGAAGAACTTCTTGAGCATGTGATTCCTTTTAAGTTTGTAGAGGTGGATGAGGAACAGTCTAGACTTGTTCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGCTAGGAATTGGATCAGTAGTCACTGGTTCTGTTCAAAGCATAAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGAAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGACCGAGAGAGAGGAAGGGTAAGTCTTTCCACAAAGAAGTTGGAACCCACACCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATTGCTCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGATTCCAGCCAGAGAGTGGATTAACTCTCAGCGGTGAAGGAATCTTAGGACCACTAACTTCAGACTTGCCTCCAGAGGGAGTGGATCTGAGTGAGGTTCCCCCAGCTGAAGATTCGTGA 1215 0.4782 MTMAMTASQLRCGWGWRPTPNQQQQRRRMVPVVCSIAIENAKNKERAKLKKLFDEAYERCRTAPTEGVSFTLQQFTDALDKYDFNAEMGTKVKGTVFATDNNGAYVDITAKSTAYLPLHEACIHRIKNVEEAGIIPGVREEFMIIDENQADDTLILSLRSIQYDIAWERCRQLKAEDAVVKGKVVNANKGGLVAQVEGLKGFVPFSQISSKSAGEELLEHVIPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVTGSVQSIKPYGAFIDIGGISGLLHVSQISHDRITDIETVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGEGILGPLTSDLPPEGVDLSEVPPAEDS* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0273 404 ProSiteProfiles S1 domain profile. 89 159 IPR003029 GO:0003676
Gso9g0273 404 SUPERFAMILY Nucleic acid-binding proteins 173 245 IPR012340 -
Gso9g0273 404 CDD S1_RPS1_repeat_hs4 254 322 - -
Gso9g0273 404 Coils Coil 339 359 - -
Gso9g0273 404 SMART S1_6 87 159 IPR022967 -
Gso9g0273 404 SMART S1_6 175 241 IPR022967 -
Gso9g0273 404 SMART S1_6 252 322 IPR022967 -
Gso9g0273 404 SUPERFAMILY Nucleic acid-binding proteins 81 184 IPR012340 -
Gso9g0273 404 CDD S1_RPS1_repeat_ec2_hs2 177 241 - -
Gso9g0273 404 PANTHER 30S RIBOSOMAL PROTEIN S1 25 404 - -
Gso9g0273 404 ProSiteProfiles S1 domain profile. 254 322 IPR003029 GO:0003676
Gso9g0273 404 Gene3D - 251 330 IPR012340 -
Gso9g0273 404 ProSiteProfiles S1 domain profile. 177 241 IPR003029 GO:0003676
Gso9g0273 404 Gene3D - 72 169 IPR012340 -
Gso9g0273 404 Pfam S1 RNA binding domain 87 158 IPR003029 GO:0003676
Gso9g0273 404 Pfam S1 RNA binding domain 253 322 IPR003029 GO:0003676
Gso9g0273 404 Pfam S1 RNA binding domain 175 241 IPR003029 GO:0003676
Gso9g0273 404 SUPERFAMILY Nucleic acid-binding proteins 253 332 IPR012340 -
Gso9g0273 404 MobiDBLite consensus disorder prediction 376 404 - -
Gso9g0273 404 CDD S1_RPS1_repeat_ec1_hs1 89 159 - -
Gso9g0273 404 PRINTS Ribosomal protein S1 signature 89 107 IPR035104 -
Gso9g0273 404 PRINTS Ribosomal protein S1 signature 107 121 IPR035104 -
Gso9g0273 404 PRINTS Ribosomal protein S1 signature 180 196 IPR035104 -
Gso9g0273 404 PRINTS Ribosomal protein S1 signature 225 245 IPR035104 -
Gso9g0273 404 Gene3D - 170 250 IPR012340 -
Gso9g0273 404 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 25 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0273 Gso-Chr9 2584852 2589416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0273 K02945 - gmx:100810511 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1146 15 11068807 11073357 Gso9g0273 9 2584852 2589416 GST
Gso17g0312 17 2797602 2801208 Gso9g0273 9 2584852 2589416 PCT
Gso9g0273 9 2584852 2589416 Gso17g0312 17 2797602 2801208 PCT