Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1146 ATGCCGATGACGATGGCGATGACGGCGTCGCAGTTGCGGTGGGGGTGGAGACCGACGCCGAAGCAGCAGCAACGACGCCGTATGGTTCCGGTGGTGTGTTCCATCGCTATAAAGAACGCTCAGAACAAAGAGAGAGCGAAACTGAAGAAGCTCTTCGAAGAAGCGTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTTTCCTTCACTATCCAACAATTCACCGACGCTCTCGACAAGTACGACTTCGACGCCGAAATGGGCACCAAGGTTAAGGGCACTGTTTTTGCCACAGATAACAGCGGAGCTTATGTTGACATTACTGCTAAGTCCACGGCCTACTTGCCTCTGCATGAGGCTTGCATCCACAGAATTAAGAATGTGGAAGAAGCAGGCATAATTCCTGGCATGAGAGAGGAATTTATGATCATTGATGAGAATCAAGCGGATGATACCTTGATCTTGAGTTTGAGGTCTATCCAATATGACATTGCATGGGAACGCTGCCGACAACTTAAGGCTGAAGATGCTGTTGTCAAGGGTAAGGTTATTAATGCAAACAAAGGAGGTCTGGTGGCTCAAGTGGAAGGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCATCGAAATCAGCTGGAGAAGAACTTCTTGAGCAGGTGATTCCTTTTAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTGTTCTCAGTCACCGCAAAGCTGTGGCTGAGAGCCAAGGACAGCTAGGAATTGGATCAGTAGTCACTGGCTCTGTTCAAAGCATAAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGAAACTGTTCTTCAACCTGGTGATGTTCTGAAGGTGATGATCTTAAGTCATGACCGAGAGAGAGGACGAGTAAGTCTTTCCACAAAGAAGTTGGAACCCACGCCTGGTGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATTGCTCAAGCAGAAGCTATGGCTCGTGCTGATATGCTTAGATTCCAGCCAGAGAGTGGATTAACTCTCAGTGGTGAAGGAATCTTAGGACCACTAGCTTCAGACTTGCCTCCAGAGGGAGTGGATCTGAGTGAGGTACCCCCAGCTGAAGATTCATGA 1212 0.4818 MPMTMAMTASQLRWGWRPTPKQQQRRRMVPVVCSIAIKNAQNKERAKLKKLFEEAYERCRTAPTEGVSFTIQQFTDALDKYDFDAEMGTKVKGTVFATDNSGAYVDITAKSTAYLPLHEACIHRIKNVEEAGIIPGMREEFMIIDENQADDTLILSLRSIQYDIAWERCRQLKAEDAVVKGKVINANKGGLVAQVEGLKGFVPFSQISSKSAGEELLEQVIPFKFVEVDEEQSRLVLSHRKAVAESQGQLGIGSVVTGSVQSIKPYGAFIDIGGISGLLHVSQISHDRITDIETVLQPGDVLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGEGILGPLASDLPPEGVDLSEVPPAEDS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1146 403 Gene3D - 70 168 IPR012340 -
Gso15g1146 403 Gene3D - 169 247 IPR012340 -
Gso15g1146 403 ProSiteProfiles S1 domain profile. 253 321 IPR003029 GO:0003676
Gso15g1146 403 SUPERFAMILY Nucleic acid-binding proteins 172 244 IPR012340 -
Gso15g1146 403 SMART S1_6 174 240 IPR022967 -
Gso15g1146 403 SMART S1_6 86 158 IPR022967 -
Gso15g1146 403 SMART S1_6 251 321 IPR022967 -
Gso15g1146 403 Gene3D - 248 325 IPR012340 -
Gso15g1146 403 Pfam S1 RNA binding domain 174 240 IPR003029 GO:0003676
Gso15g1146 403 Pfam S1 RNA binding domain 86 158 IPR003029 GO:0003676
Gso15g1146 403 Pfam S1 RNA binding domain 252 321 IPR003029 GO:0003676
Gso15g1146 403 SUPERFAMILY Nucleic acid-binding proteins 77 183 IPR012340 -
Gso15g1146 403 Coils Coil 338 358 - -
Gso15g1146 403 CDD S1_RPS1_repeat_ec2_hs2 176 240 - -
Gso15g1146 403 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 24 403 - -
Gso15g1146 403 PRINTS Ribosomal protein S1 signature 88 106 IPR035104 -
Gso15g1146 403 PRINTS Ribosomal protein S1 signature 106 120 IPR035104 -
Gso15g1146 403 PRINTS Ribosomal protein S1 signature 179 195 IPR035104 -
Gso15g1146 403 PRINTS Ribosomal protein S1 signature 224 244 IPR035104 -
Gso15g1146 403 SUPERFAMILY Nucleic acid-binding proteins 247 327 IPR012340 -
Gso15g1146 403 CDD S1_RPS1_repeat_hs4 253 321 - -
Gso15g1146 403 ProSiteProfiles S1 domain profile. 88 158 IPR003029 GO:0003676
Gso15g1146 403 Coils Coil 38 58 - -
Gso15g1146 403 ProSiteProfiles S1 domain profile. 176 240 IPR003029 GO:0003676
Gso15g1146 403 PANTHER 30S RIBOSOMAL PROTEIN S1 24 403 - -
Gso15g1146 403 MobiDBLite consensus disorder prediction 375 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1146 Gso-Chr15 11068807 11073357 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1146 K02945 - gmx:100806905 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1146 15 11068807 11073357 Gso9g0273 9 2584852 2589416 GST
Gso17g0312 17 2797602 2801208 Gso15g1146 15 11068807 11073357 PCT
Gso15g1146 15 11068807 11073357 Gso17g0312 17 2797602 2801208 PCT