Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0312 ATGGGGTCTCTGCCTCTGCAATTCAGCGGGCTCAAGTGCTCCCCACTCTCATCTTCTTCTCTCTTCTCCAAACCTTCTCTTTGGACCCAACAATCCCAAAAGCGCGTTTCAATTACCATTGCGAACTCAATAGCAATAGCCAATGCGCAGAACAAAGAGAGAGCGAGGCTTAAGAAACTCTTCGAAGAAGCCTACGAGAGATGCCGCAATGCTCCAATGGAAGGTGTTTCCTTCACCATCGAAGACTTCACTGCTGCTCTTGACAAGTACGACTTCGATTCTGAAGTTGGCGGCAAGATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATCACTGCAAAGTCTTCGGCATATTTGCCACTGCAAGAGGCGTGCATCCACAGGGTTAAGCATGTTGAAGAAGCAGGCTTAGTTCCTGGGTTCAAAGAGGAGTTTTTGATCATTGGTGAGAACTCAATAGATGATAGCTTGGTCTTGAGTTTAAGGTCTCTTCAGTTTGACCTTGCATGGGAACGTTGTAGACAGCTTCAAGCTGAAGATGTCACAGTCAAGGGTAAGATTGTGGGGGTGAACAAAGGTGGAGTGGTGGCTGAGTTGGAAGGGCTTAGAGGGTTTGTTCCATTGTCTCAAATATCAACGAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGCAACCGCAAGGCCGTAGCTGGCAACCAGGCACAGCTAGGAATTGGATCAGTGGTCACTGGCTCTGTTCAAAGCCTGAAGCCATATGGTGCTTTCATTGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACTGATATTTCAACTGTGCTTCAACCTGGTGACATATTAAAGGTGATGATCTTAAGCCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCAGACATGCTAAGGTTCCAGCCTGAGAGTGGATTGACTATCAGCGGTGATGGGATCCTGGGACCATTTACTTCAGACTTGCCTGAAGAGGGACTGGATTTGAGTGAGGTACCACCAGCTGAAGAATCATGA 1239 0.4689 MGSLPLQFSGLKCSPLSSSSLFSKPSLWTQQSQKRVSITIANSIAIANAQNKERARLKKLFEEAYERCRNAPMEGVSFTIEDFTAALDKYDFDSEVGGKIKGTVFYTDNNGAVVDITAKSSAYLPLQEACIHRVKHVEEAGLVPGFKEEFLIIGENSIDDSLVLSLRSLQFDLAWERCRQLQAEDVTVKGKIVGVNKGGVVAELEGLRGFVPLSQISTNSNVEELLDKELPLKFVEVDEEQSRLVLSNRKAVAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTISGDGILGPFTSDLPEEGLDLSEVPPAEES* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0312 412 MobiDBLite consensus disorder prediction 386 412 - -
Gso17g0312 412 CDD S1_RPS1_repeat_hs4 262 330 - -
Gso17g0312 412 Gene3D - 80 177 IPR012340 -
Gso17g0312 412 Coils Coil 347 367 - -
Gso17g0312 412 CDD S1_RPS1_repeat_ec2_hs2 185 249 - -
Gso17g0312 412 SUPERFAMILY Nucleic acid-binding proteins 261 340 IPR012340 -
Gso17g0312 412 SUPERFAMILY Nucleic acid-binding proteins 92 192 IPR012340 -
Gso17g0312 412 SMART S1_6 95 167 IPR022967 -
Gso17g0312 412 SMART S1_6 260 330 IPR022967 -
Gso17g0312 412 SMART S1_6 183 249 IPR022967 -
Gso17g0312 412 ProSiteProfiles S1 domain profile. 262 330 IPR003029 GO:0003676
Gso17g0312 412 SUPERFAMILY Nucleic acid-binding proteins 186 254 IPR012340 -
Gso17g0312 412 Coils Coil 47 67 - -
Gso17g0312 412 Gene3D - 257 334 IPR012340 -
Gso17g0312 412 ProSiteProfiles S1 domain profile. 97 167 IPR003029 GO:0003676
Gso17g0312 412 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 412 - -
Gso17g0312 412 ProSiteProfiles S1 domain profile. 185 249 IPR003029 GO:0003676
Gso17g0312 412 Pfam S1 RNA binding domain 184 247 IPR003029 GO:0003676
Gso17g0312 412 Pfam S1 RNA binding domain 261 330 IPR003029 GO:0003676
Gso17g0312 412 PANTHER 30S RIBOSOMAL PROTEIN S1 1 412 - -
Gso17g0312 412 Gene3D - 178 256 IPR012340 -
Gso17g0312 412 PRINTS Ribosomal protein S1 signature 97 115 IPR035104 -
Gso17g0312 412 PRINTS Ribosomal protein S1 signature 115 129 IPR035104 -
Gso17g0312 412 PRINTS Ribosomal protein S1 signature 188 204 IPR035104 -
Gso17g0312 412 PRINTS Ribosomal protein S1 signature 233 253 IPR035104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0312 Gso-Chr17 2797602 2801208 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0312 K02945 - gmx:100812847 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0312 17 2797602 2801208 Gso17g0312 17 2797602 2801208 ECH
Gso17g0312 17 2797602 2801208 Gso15g1146 15 11068807 11073357 PCT
Gso17g0312 17 2797602 2801208 Gso9g0273 9 2584852 2589416 PCT
Gso15g1146 15 11068807 11073357 Gso17g0312 17 2797602 2801208 PCT
Gso9g0273 9 2584852 2589416 Gso17g0312 17 2797602 2801208 PCT