Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1732 ATGCCTTCTCTCTCGGAAGCCTTTAGAGGTCACCCCGTGTACCTTCATCAGAAACACCACGACTTCAACTCACTTCAAGAACTCCCTGACTCTTACGCTTGGACACAACCTGATGATGATGATCACCGTCTCACAAATTACCCTTCCAACAATAAGACTAAGACCGTTGTCCCCATCATCGATTTGAACGACCCAAATGCTCCAAACCTCATAGGCCATGCATGCAAAACATGGGGTGTGTTCCAAGTGGTGAACCATGGCATCCCCACGAGCCTCTTCAGTGACATTCAGAGGGCTAGTCTTGCTCTATTCTCCCTTCCTCTTCACCAGAAGCTCAAAGCAGCTCGCTCCCCCGACGGCGTCTCCGGCTACGGCCGCGCTCGCATTTCCTCCTTCTTCCCCAAGCTCATGTGGTCTGAGTGCTTCACAATTCTCGATTCCCCTCTTGATCTTTTCCTCAAACTCTGGCCACAAGACTATGCTAAATACTGTGATATTGTCGTGGAATATGAAGCAGCCATGAAAAAGCTAGCAGCGAAGTTAATGTGCCTTATGTTGGCTTCCCTTGGTATTCCCAAGGAAGACATTAAATGGGCTGGGCCGAAAGGAGAATTCAACGGGGCTTGTGCGGCTTTGCATTGGAATTCTTACCCGAGTTGCCCGGATCCGGATCGGGCCATGGGTCTGGCCGCGCACACGGACTCCACTCTCCTCACAATCCTGCACCAAAACAATGTCAATGGGCTTCAGGTTCTCAAGGAAGGGGAAGGGTGGGTGGCGGTGCCTCCGCTTCCCGGAGGGCTCGTGATCAACGTCGGCGATCTGCTCCACATTTTGTCAAACGGGTTGTACCCGAGTGTGCTGCATCGAGTTCGGGTGAACCGAACCCGGCAGAGGTTCTCGGTTGCTTATCTATATGGGCCCCCAACAAACGTCCAAATCAGTCCACAAGTAAAATTGGTAGGCCCAACAAGGCCCGTTCTTTATCGATCAGTGACTTGGAACGAGTACCTTGGCACCAAAGCAAAGCTTTTTAATAAGGCTCTTTCAGCTGTTAGGCTTTCTTCATCTATTAACGGTTTGTTTGATGTAAACGAGGATAAGAGTAACGACTTTCAAGTGGGCTAG 1128 0.5053 MPSLSEAFRGHPVYLHQKHHDFNSLQELPDSYAWTQPDDDDHRLTNYPSNNKTKTVVPIIDLNDPNAPNLIGHACKTWGVFQVVNHGIPTSLFSDIQRASLALFSLPLHQKLKAARSPDGVSGYGRARISSFFPKLMWSECFTILDSPLDLFLKLWPQDYAKYCDIVVEYEAAMKKLAAKLMCLMLASLGIPKEDIKWAGPKGEFNGACAALHWNSYPSCPDPDRAMGLAAHTDSTLLTILHQNNVNGLQVLKEGEGWVAVPPLPGGLVINVGDLLHILSNGLYPSVLHRVRVNRTRQRFSVAYLYGPPTNVQISPQVKLVGPTRPVLYRSVTWNEYLGTKAKLFNKALSAVRLSSSINGLFDVNEDKSNDFQVG* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1732 375 Pfam 2OG-Fe(II) oxygenase superfamily 213 308 IPR044861 -
Gso8g1732 375 Gene3D - 18 346 IPR027443 -
Gso8g1732 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 207 308 IPR005123 -
Gso8g1732 375 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 366 - -
Gso8g1732 375 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 366 - -
Gso8g1732 375 SUPERFAMILY Clavaminate synthase-like 15 344 - -
Gso8g1732 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 57 149 IPR026992 -
Gso8g1732 375 PRINTS Isopenicillin N synthase signature 71 88 - -
Gso8g1732 375 PRINTS Isopenicillin N synthase signature 268 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1732 Gso-Chr8 16947332 16949497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1732 71 337 Glycosyltransferase AT5G59530 31.786 2.43e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1732 K04124 - gmx:100794180 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0113 15 969454 971481 Gso8g1732 8 16947332 16949497 PCT
Gso11g3690 11 52538780 52540910 Gso8g1732 8 16947332 16949497 PCT
Gso8g1732 8 16947332 16949497 Gso15g0113 15 969454 971481 PCT
Gso8g1732 8 16947332 16949497 Gso11g3690 11 52538780 52540910 PCT