Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1727 ATGGGCGCTTCTCTGCCCCCCAAGGAGGCCAACCTCTTCAAGCTTATTGTCAAATCATATGAAACCAAACAATATAAAAAGGGTCTCAAAGCAGCTGATGCAATTTTGAAAAAATTTCCAGACCATGGAGAAACTTTATCGATGAAGGGTTTGACATTAAATTGCATGGACCGTAAGTCTGAAGCATACGAACTTGTTCGGCAAGGATTAAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGGTCAGACAGAGAATACAGGGAGGCGATCAAGTGCTATCGAAATGCACTGAGAATTGATCCCGACAATATTGAAATTCTTCGTGACCTATCACTCCTACAGGCACAAATGCGAGATTTGTCAGGCTTTGTCGAGACAAGACAACAACTTTTGACTTTGAAGCCAAATCATCGCATGAACTGGATTGGATTTTCTGTAGCCCATCATTTGAACTCTAATGCATCCAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGAAGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGATCTCATTGTTAGAGGAATGCGGGTTTCTTGAGAGAGCTCTGGAGGAGTTGCACAAAAAAGAATCTAAAATTGTTGATAAACTTGTATACAAAGAACAAGAGGTTTCACTTTTAGTAAAGCTTGGTCACCTAGAAGAAGGCGAAGCTTTGTACCAGGCATTACTTTCCATGAATCCTGATAATTATAGATATTATGAAGGTCTCCAAAAGTGTGTTGGATTATATTTAGAAGATGGCCAGTACTCTCCTGATCAAATAGATCGGTTAGATTCATTGTACAAAACACTTGTACAACAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCACTAGATTTTCTACAAGGTGACAAATTTCGAGAAGCAGCAGACAATTATATTAGGCCTCTCCTAACCAAGGGAGTTCCATCTCTGTTCTCTGATCTATCATCTTTGTACAATCATCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTTGAGTTAGAGCGTTCAATTAGGATGTCTGGCCAATATCCTGGAAGGATGGACAAAGAACCTCCTTCAACTCTCATGTGGACTTTGTTTTTATTGGCTCAGCATTATGACAGGCGAGGCCAATATGAAGTTGCTCTTTCTAAAATTGATGAAGCTATAGAACATACACCTACAGTCATTGATCTATATTCTGTTAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTTGCCGATCGCTATGTTAATAGTGAATGTGTAAAGCGCATGTTGCAGGCTGATCAGGTGGCTTTGGCTGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGGTATGAGCTTGCCTCAGGTGAAAGCTATTTCCGTCAAGGTGATCTTGGACGGGCACTCAAGAAATTTTTAGCAGTGGAGAAGCATTATGCTGATATTACTGAGGACCAATTTGATTTTCATTCATACTGCTTACGGAAAATGACTTTGTGTACTTATGTGGAAATGCTTAAATTTCAAGACCAATTGCACTCACATGCATATTTTCATAAAGCAGCAGCTGGTGCTATCAGAGGCTATATTAAGTTGCATGATTCTCCCCCAAAGTCTACAGCAGAGGAAGATGATAATATGTCAAAGTTGCTTCCTTCTCAGAAGAAGAAAATGAGACAAAAGCAGAGAAAGGCAGAAGCAAGAGCCAAAAAGGAGGCAGAAGAGAAGAATGAAGAGTCAAGTGCCAGTGGGGTATCAAAGTCTGGGAAGCGGCACATAAAACCTGTTGACCCTGATCCAAACGGAGAGAAGTTGTTGCAGGTTGAAGATCCACTGTCAGAAGCTACTAAATACTTGAAGTTGCTGCAGAAGAATTCCCCTGATTCATTGGAGACGCACTTGCTCTCTTTTGAATTATATACAAGGAAACAAAAGATTTTGCTTGCCTTGCAGGCTGTAAAGCAGTTACTGAGATTGGATGCTGAACACCCTGATTCTCATCGTTGTTTGATTAAATTCTTCCATAAAGTGGGATCCATGAATGCTTCTGTGACTGACAGTGAGAAACTGATTTGGAGTGTCTTAGAGGCTGAGCGCCCAACTATTAGTCAGCTGCATGAGAAATCCCTGTTTGAGGCAAACAACTCATTCCTTGAAAAACATAAAGATTCTTTGATGCATAGAGCAGCTTTTGCAGAAATATTGCATATTTTGGATTCAAACAGAAAGTCTGAGGCTGTTAAGTTCATTGAAGAGTCAACAAATAACATTGTGCCCAGAAATGGAGCACTTGGACCAATCAGGGAATGGAATCTTAAAGACTGTATTGCAGTTCACAAGCTTCTTGGAACAGTTCTTGCTGATCAGGATGCTGCATTGAGATGGAAGGTGCGTTGTGCAGAGTACTTCCCATATTCTACATACTTTGAGGGATGCCACAGCTCTGCCTCTCCCAACTCGGCCTTCAATCAGTTACGTAAGAACTCTGAAAATGAGAGTCCTAACCATTCAGTGGGTGGTCAAAATGTGGGCTCCATCACATCAAACGGGAAACTAGAGGCATTTAAAGATCTCACTATCTAA 2706 0.408 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKPNHRMNWIGFSVAHHLNSNASKAVEILEAYEGTLEEDHPPENERCEHGEMLLYKISLLEECGFLERALEELHKKESKIVDKLVYKEQEVSLLVKLGHLEEGEALYQALLSMNPDNYRYYEGLQKCVGLYLEDGQYSPDQIDRLDSLYKTLVQQYKWSSAVKRIPLDFLQGDKFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELERSIRMSGQYPGRMDKEPPSTLMWTLFLLAQHYDRRGQYEVALSKIDEAIEHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASGESYFRQGDLGRALKKFLAVEKHYADITEDQFDFHSYCLRKMTLCTYVEMLKFQDQLHSHAYFHKAAAGAIRGYIKLHDSPPKSTAEEDDNMSKLLPSQKKKMRQKQRKAEARAKKEAEEKNEESSASGVSKSGKRHIKPVDPDPNGEKLLQVEDPLSEATKYLKLLQKNSPDSLETHLLSFELYTRKQKILLALQAVKQLLRLDAEHPDSHRCLIKFFHKVGSMNASVTDSEKLIWSVLEAERPTISQLHEKSLFEANNSFLEKHKDSLMHRAAFAEILHILDSNRKSEAVKFIEESTNNIVPRNGALGPIREWNLKDCIAVHKLLGTVLADQDAALRWKVRCAEYFPYSTYFEGCHSSASPNSAFNQLRKNSENESPNHSVGGQNVGSITSNGKLEAFKDLTI* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1727 901 Pfam TPR repeat 84 123 - -
Gso8g1727 901 Gene3D - 505 727 - -
Gso8g1727 901 SMART tpr_5 380 413 IPR019734 GO:0005515
Gso8g1727 901 SMART tpr_5 43 76 IPR019734 GO:0005515
Gso8g1727 901 SMART tpr_5 77 110 IPR019734 GO:0005515
Gso8g1727 901 MobiDBLite consensus disorder prediction 866 886 - -
Gso8g1727 901 PIRSF NAT_A 1 818 IPR021183 -
Gso8g1727 901 SUPERFAMILY TPR-like 384 724 IPR011990 GO:0005515
Gso8g1727 901 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 880 - -
Gso8g1727 901 MobiDBLite consensus disorder prediction 577 645 - -
Gso8g1727 901 MobiDBLite consensus disorder prediction 577 593 - -
Gso8g1727 901 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Gso8g1727 901 SUPERFAMILY TPR-like 21 262 IPR011990 GO:0005515
Gso8g1727 901 PANTHER BNAC02G23120D PROTEIN 10 880 - -
Gso8g1727 901 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Gso8g1727 901 Coils Coil 596 620 - -
Gso8g1727 901 MobiDBLite consensus disorder prediction 606 622 - -
Gso8g1727 901 Gene3D - 2 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1727 Gso-Chr8 16865580 16879296 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1727 K20792 - gmx:100820094 1759.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0120 15 1041185 1054218 Gso8g1727 8 16865580 16879296 PCT
Gso11g3684 11 52467331 52480998 Gso8g1727 8 16865580 16879296 PCT
Gso8g1727 8 16865580 16879296 Gso15g0120 15 1041185 1054218 PCT
Gso8g1727 8 16865580 16879296 Gso11g3684 11 52467331 52480998 PCT