Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1588 ATGACTATGTCTACTATTTGGCTTTTGACTCTCTTTTCTGTCATTTATGGCAGTGCAGCTACTCATCACGTTTATAGAAATCTTCAGAGTGTATCTTCTGATTCCTCCAACCAACCTTACAGAACTGCTTATCACTTCCAACCTCCCAATAATTGGATAAATGATCCCAATGGACCATTGAGATATGGAGGACTCTATCACCTGTTCTATCAATACAATCCTAAAGGTGCAGTTTGGGGAAATATTGTGTGGGCACATTCAGTTTCAAAGGATCTTGTGAATTGGACCCCACTAGATCCTGCCATCTTTCCATCTCAATCGTCCGATATAAATGGTTGTTGGTCAGGATCAGCCACACTACTTCCCGGGAACAAACCAGCCATTTTGTATACTGGAATTGACTCATTGAATCAGCAAGTTCAAAACTTTGCCCAACCAAAAAATTTGTCTGACCCATTTCTTAGGGAATGGGTTAAGTCCCCCAAAAATCCCCTAATGGCACCAACTAGTGCTAACAAGATCAATTCAAGTTCATTTAGGGACCCCACCACTGCTTGGCTAGGCAAAGATGGGCATTGGAGGGTACTTGTTGGAAGCAAAAGAAGAACTAGGGGAATGGCAATCTTGTATAGGAGCAAAGACTTTGTTAAATGGGTTCAAGCCAAACACCCTTTGCATTCAACCCTAGGAAGTGGCATGTGGGAGTGTCCTGATTTTTTCCCTGTTTTGAGTAATGGCCAATTGGGTGTTGACACGTCGGTGAACGGTGAATATGTTAGGCACGTGCTCAAGGTTAGCTTAGATGACAAAAAACATGATTACTATATGATTGGGAGTTACAATGCTGCCAAGGATGCATTTATCCCAGATGAAGAGTCTAATATATTTGTTTTAAGATATGATTATGGAAAATACTATGCCTCAAAAACTTTCTTTGATGATGGGAAGAAGAGAAGGATTTTGCTAGGGTGGGTCAATGAATCCTCTAGTGTTGCTGATGATATCAAGAAAGGATGGTCTGGAATCCATACAATTCCAAGGGCTATATGGCTTCATAAGTCTGGTAGACAGTTGGTACAGTGGCCAGTGGAAGAAGTTGAAAAGCTACGTGCATACCCAGTCAACTTGCTACCCCAAGTGCTAAAAGGAGGCAAGTTGCTTCCAATTAATGGTGTCACAGCATCACAGGCTGATGTTGAAATTTCGTTTGAAGTGAGTAAGTTGAGAAAGGCTGAAGTATTGGACTATTGGACAGACCCCCAAATTCTATGTAGTAAAAAGGGTTCATCCGTCAAAAGTGGTTTGGGCCCATTTGGTCTGCTAGTTTTTGCTTCAGAAGGTTTGCAAGAGTATACATCAGTTTTCTTCAGAATATTCAGACACCAACACAAATATTTGGTGCTCTTGTGCAGTGACCAAAACAGGTCTTCCTTAAACAAAGACAATGATTTAACCTCTTATGGAACTTTTGTGGACGTGGACCCTCTTCATGACAAGCTATCATTGAGAACCTTGATTGATCATTCTGTCGTGGAGAGTTTTGGAGGAGAAGGAAGGGCTTGCATCACAGCAAGAGTTTATCCCACGTTGGCAATCAATGATAAAGCACAACTATATGCTTTCAATAATGGAACTGCTGATGTCAAGATCACAAGATTGAGTGCTTGGAGCATGAAGAAAGCACAAATACATTGA 1695 0.4124 MTMSTIWLLTLFSVIYGSAATHHVYRNLQSVSSDSSNQPYRTAYHFQPPNNWINDPNGPLRYGGLYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWTPLDPAIFPSQSSDINGCWSGSATLLPGNKPAILYTGIDSLNQQVQNFAQPKNLSDPFLREWVKSPKNPLMAPTSANKINSSSFRDPTTAWLGKDGHWRVLVGSKRRTRGMAILYRSKDFVKWVQAKHPLHSTLGSGMWECPDFFPVLSNGQLGVDTSVNGEYVRHVLKVSLDDKKHDYYMIGSYNAAKDAFIPDEESNIFVLRYDYGKYYASKTFFDDGKKRRILLGWVNESSSVADDIKKGWSGIHTIPRAIWLHKSGRQLVQWPVEEVEKLRAYPVNLLPQVLKGGKLLPINGVTASQADVEISFEVSKLRKAEVLDYWTDPQILCSKKGSSVKSGLGPFGLLVFASEGLQEYTSVFFRIFRHQHKYLVLLCSDQNRSSLNKDNDLTSYGTFVDVDPLHDKLSLRTLIDHSVVESFGGEGRACITARVYPTLAINDKAQLYAFNNGTADVKITRLSAWSMKKAQIH* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1588 564 Pfam Glycosyl hydrolases family 32 N-terminal domain 45 362 IPR013148 -
Gso8g1588 564 SUPERFAMILY Concanavalin A-like lectins/glucanases 362 560 IPR013320 -
Gso8g1588 564 SMART glyco_32 45 518 IPR001362 GO:0004553|GO:0005975
Gso8g1588 564 PANTHER CELL-WALL INVERTASE 2 563 - -
Gso8g1588 564 CDD GH32_Fruct1-like 51 351 - -
Gso8g1588 564 Pfam Glycosyl hydrolases family 32 C terminal 365 557 IPR013189 -
Gso8g1588 564 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 2 563 - -
Gso8g1588 564 ProSitePatterns Glycosyl hydrolases family 32 active site. 45 58 IPR018053 GO:0004553|GO:0005975
Gso8g1588 564 SUPERFAMILY Arabinanase/levansucrase/invertase 36 363 IPR023296 -
Gso8g1588 564 Gene3D - 373 558 - -
Gso8g1588 564 Gene3D Glycosyl hydrolase domain; family 43 49 372 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1588 Gso-Chr8 15532464 15537398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g1588 62 563 Glycoside Hydrolase AT3G13790 66.016 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1588 K01193 - gmx:100777339 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0075 7 649220 654113 Gso8g1588 8 15532464 15537398 GST
Gso15g0219 15 2003633 2007256 Gso8g1588 8 15532464 15537398 PCT
Gso11g3589 11 51587669 51591040 Gso8g1588 8 15532464 15537398 PCT
Gso8g1588 8 15532464 15537398 Gso15g0219 15 2003633 2007256 PCT
Gso8g1588 8 15532464 15537398 Gso11g3589 11 51587669 51591040 PCT