Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0219 ATGGCCGTATCTCCAATTTTGTTGTTGTTGGCTATCTTCTCTCTCATTTATGGCAATGGTATTCTTCCCATTGAAGCTACCCACCATGTTTACAGAAATCTTCAGACTCTATCTTCTGATTCCTCTGATCAACCTTATAGAACCGCTTACCATTTCCAACCTCCCAAAAATTGGATAAATGACCCTAATGGACCAATGAGGTACAAAGGACTTTATCATCTCTTCTACCAATACAATCCAAAAGGTGCTGTTTGGGGTAATATTGTGTGGGCCCACTCAGTATCAAAGGATCTTGTGAATTGGACCCCTCTAGATCATGCCATCTACCCTTCTCAACCGTCTGATATCAACGGTTGTTGGTCAGGCTCAGCCACAATACTTCCTGGGGGCAAACCAGCCATTTTATACACAGGAATTGACCCTAATAATCACCAAGTTCAAAACTTAGCCCTACCCAAAAACATGTCTGACCCATTACTTAGGGAATGGGTTAAGTCACCCAAAAATCCACTAATGGCACCAACTAGTGCTAACATGATCAATTCAAGCTCATTTAGGGATCCTACCACTGCTTGGCTAGGCAAAGATGGGTACTGGAGGGTGCTGATTGGAAGCAAAATACACACTAGGGGTATGGCAATTTTGTACAAGAGCAAAAACTTTGTTAATTGGGTTCAAGCCAAACAACCCCTACATTCAGCTGAAGGCACTGGAATGTGGGAGTGCCCTGATTTCTATCCAGTGCTGAATAATAAACCATCATCAACTATTGGTCTTGACACATCTGTGAATGGTGATAATGTTAGGCATGTGCTTAAGGTTAGTTTGGATGATAAAAAACATGATCATTATTTGATTGGGACTTATGACATTGCCAAGGATATCTTCACTCCGGATAATGGATTTGAGGATAGTCAAACTGTCCTAAGATATGACTATGGAAAATATTATGCCTCAAAAACCATTTTTGAGGATGGAAAGAACAGAAGGGTCTTATTGGGTTGGGTTAATGAATCCTCAAGTGTTTCGGATGATATCAAGAAAGGATGGGCTGGAATCCATACTATTCCAAGGGCCATCTGGCTTCATAAATCTGGAAAACAGTTGGTGCAATGGCCGGTGGTGGAACTTGAAAGCTTACGTGTGAATCCTGTCCACTGGCCCACCAAAGTGGTCAAAGGTGGTGAAATGCTTCAAGTTACTGGTGTTACTGCGGCACAGGCTGACGTTGAAATTTCATTTGACGTGAATGAGTTTGGAAAGGGCGAAGTATTGGACCAATGGGTGGATCCCCAAATTCTGTGTAGTAGAAAGGGTGCAGCCGTAAAGGGTGGTTTGGGACCCTTTGGCTTGCTAGTTTTTGCTTCTCGTGGCTTGCAAGAGTACACGGCAGTATTCTTTAGAATATTCAGATACCAAAATAAAAATTTGGTTCTCATGTGTAGCGACCAAAGCAGATCCTCTTTGAATAAAGATAACGATATGACCACCTATGGGACTTTTGTGGACATGGACCCTCTTCATGAGAAGCTGTCACTAAGAACTTTGATTGATCACTCAGTAGTGGAGAGTTTTGGAGGAGAGGGAAGGGCTTGCATCACAGCCAGAGTATATCCCACAATAGCAATTAATGAAAAGGCACAACTATATGCTTTCAATAATGGAACTGCCGCCGTCAAGATTACAAGATTGAGTGCTTGGAGCATGGAGAAGGCAAAAATAAACTGA 1728 0.4225 MAVSPILLLLAIFSLIYGNGILPIEATHHVYRNLQTLSSDSSDQPYRTAYHFQPPKNWINDPNGPMRYKGLYHLFYQYNPKGAVWGNIVWAHSVSKDLVNWTPLDHAIYPSQPSDINGCWSGSATILPGGKPAILYTGIDPNNHQVQNLALPKNMSDPLLREWVKSPKNPLMAPTSANMINSSSFRDPTTAWLGKDGYWRVLIGSKIHTRGMAILYKSKNFVNWVQAKQPLHSAEGTGMWECPDFYPVLNNKPSSTIGLDTSVNGDNVRHVLKVSLDDKKHDHYLIGTYDIAKDIFTPDNGFEDSQTVLRYDYGKYYASKTIFEDGKNRRVLLGWVNESSSVSDDIKKGWAGIHTIPRAIWLHKSGKQLVQWPVVELESLRVNPVHWPTKVVKGGEMLQVTGVTAAQADVEISFDVNEFGKGEVLDQWVDPQILCSRKGAAVKGGLGPFGLLVFASRGLQEYTAVFFRIFRYQNKNLVLMCSDQSRSSLNKDNDMTTYGTFVDMDPLHEKLSLRTLIDHSVVESFGGEGRACITARVYPTIAINEKAQLYAFNNGTAAVKITRLSAWSMEKAKIN* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0219 575 SMART glyco_32 51 529 IPR001362 GO:0004553|GO:0005975
Gso15g0219 575 CDD GH32_Fruct1-like 57 362 - -
Gso15g0219 575 SUPERFAMILY Concanavalin A-like lectins/glucanases 373 571 IPR013320 -
Gso15g0219 575 Gene3D - 384 569 - -
Gso15g0219 575 Pfam Glycosyl hydrolases family 32 N-terminal domain 51 373 IPR013148 -
Gso15g0219 575 ProSitePatterns Glycosyl hydrolases family 32 active site. 51 64 IPR018053 GO:0004553|GO:0005975
Gso15g0219 575 PANTHER CELL-WALL INVERTASE 2 575 - -
Gso15g0219 575 Pfam Glycosyl hydrolases family 32 C terminal 376 568 IPR013189 -
Gso15g0219 575 Gene3D Glycosyl hydrolase domain; family 43 55 383 IPR023296 -
Gso15g0219 575 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 2 575 - -
Gso15g0219 575 SUPERFAMILY Arabinanase/levansucrase/invertase 42 374 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0219 Gso-Chr15 2003633 2007256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0219 66 575 Glycoside Hydrolase AT3G13790 64.093 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0219 K01193 - gmx:100776791 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0219 15 2003633 2007256 Gso11g3589 11 51587669 51591040 GST
Gso15g0219 15 2003633 2007256 Gso7g0075 7 649220 654113 PCT
Gso15g0219 15 2003633 2007256 Gso8g1588 8 15532464 15537398 PCT
Gso7g0075 7 649220 654113 Gso15g0219 15 2003633 2007256 PCT
Gso8g1588 8 15532464 15537398 Gso15g0219 15 2003633 2007256 PCT