Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0062 ATGGGCAACTGCTGCTCCGACGTCGCTGGCGGCCAATCTGCCATCGGCGGCACCGCCGCCGGCCACCTCAATCCGGCCAACGCTCCCAACGACGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGCTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGCAGCACTCACAGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCATATATAATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAATATCTAGGTGAGGCAACCTGTGCACTATCTGAGATAATTACAAAGTTTGACCGATCAATGACATTAGATTTACACAGAAGAGAAGATTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAAGAATGTGTTAGTTCAAAGACTACAATAGAGATGATTCTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGCTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATTATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGAGCTGGAGAAGCTTTATTCAGGTGGCCAAGGAGAAAATTTTATTTCGTCTGCTCCTGCGGGTCATAATTCTCATAACAAGGTGTTAAAAAGCCAGTTATTTGTGGACAAATTTTCTGAGAGTATCCAATATAGTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCGAATGCATACCAGAGGGCAGTTTTAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGCTCCTGTCTCCCATTGTTTCAACCTGAATGGAAGCAGCCATTGCTGTGAGGTGGAAGGCATCCAAGGAATTATGATGGCATACACGAGTGCCCTGCTTAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACTGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGATCTACCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGATTTTGGATGCTGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTCCGTGACGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTTTAGCTGAATTACCTACTCAATTTTTAAGTTACATGCGGAGCAGAAATATCCTACCGAATTCCTAG 1743 0.4257 MGNCCSDVAGGQSAIGGTAAGHLNPANAPNDAVDRFLRSRGYNGLFSQIELSFSASGLRDRDVLSKSDPMMVLYARGKNAALTELGRTEVILNSLNPTWITKHTLIYNFEVVQVLVFRVYDVDTQFHNIDVKMLKLEEQQYLGEATCALSEIITKFDRSMTLDLHRREDSIRSTQSQNCGKLLVHAEECVSSKTTIEMILRCSDLEYRDLFSRSDPFLLLSKVVEGGSHIPICKTEVIKNDHNPIWKPVFLNIQQVGSKESPLIIECYNFNSNGKHDLMGKVQKSLVELEKLYSGGQGENFISSAPAGHNSHNKVLKSQLFVDKFSESIQYSFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAVLEVGEVLQYYDSDKRFPTWGFGARPIDAPVSHCFNLNGSSHCCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGERLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLSYMRSRNILPNS* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0062 580 CDD C2A_Copine 47 168 - -
Gso8g0062 580 SUPERFAMILY vWA-like 343 525 IPR036465 -
Gso8g0062 580 CDD C2B_Copine 196 291 IPR037768 -
Gso8g0062 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 165 IPR035892 -
Gso8g0062 580 Pfam C2 domain 199 290 IPR000008 -
Gso8g0062 580 Pfam C2 domain 54 154 IPR000008 -
Gso8g0062 580 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 579 - -
Gso8g0062 580 CDD vWA_copine_like 313 567 IPR010734 -
Gso8g0062 580 Gene3D C2 domain 195 315 IPR035892 -
Gso8g0062 580 SMART VWA_4 342 539 IPR002035 -
Gso8g0062 580 Gene3D C2 domain 52 194 IPR035892 -
Gso8g0062 580 SMART C2_3c 199 301 IPR000008 -
Gso8g0062 580 SMART C2_3c 48 161 IPR000008 -
Gso8g0062 580 Pfam Copine 363 578 IPR010734 -
Gso8g0062 580 ProSiteProfiles C2 domain profile. 29 164 IPR000008 -
Gso8g0062 580 ProSiteProfiles VWFA domain profile. 344 563 IPR002035 -
Gso8g0062 580 ProSiteProfiles C2 domain profile. 178 303 IPR000008 -
Gso8g0062 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 289 IPR035892 -
Gso8g0062 580 PANTHER COPINE 1 579 IPR045052 GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0062 Gso-Chr8 575696 583603 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0062 - - gmx:100807801 1152.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0062 8 575696 583603 Gso4g1700 4 47042612 47051280 PCT
Gso8g0062 8 575696 583603 Gso6g1387 6 13607625 13615686 PCT
Gso4g1700 4 47042612 47051280 Gso8g0062 8 575696 583603 PCT
Gso6g1387 6 13607625 13615686 Gso8g0062 8 575696 583603 PCT