Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1700 ATGGGAAACCGCTTATCCGAAGTCGCCGCAGGCCGCGCCGCCATCGGCGGCATCGCCGCCGATTTTCTCAATCTGGCCGCCGCTCCAATCGACGCTGTCGAGAACTTCCTCAGGTCCCGCGGCCACCACGGCCTCTTCTCTCAGATCGAGTTATCGTTTTCCGCTTCTGGCTTGCGTGATCGTGATGTGCTCTTCAAGAGTAATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGGAGCACTTGAGGAGCTTTGCCGCACGGAAGTAGTTCTGAATTCATCAAGTCCAAGATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATATAAAGATGCTTGATCTAGATGAACAGCAATTTCTTGGCGAGGCAACCTGTGCACTATCTCAGATAATCACACAACCTGATAAGTCATTGACTATAGATCTATACACAGAAGATTCTGTCGGATCTACCCTTTCCAAAAACTGTGGGAAACTCATGGTGCATGGTGAGGAATGTATTAGCTCAAAGACTGCAATAGAGATGGTATTCAGGTGTTCAGATTTGGAATACAAGTATCTCTTCTCAAGAACTGACCCCTTTTTATTGATATCAAAAGTTGTGGAGGCTGGTGCCCAAATTCCAATTTGCAAAACAGAAGTTATAAGGAATGATCTCAACCCAATATGGAAATCGGTGTTTGTGAATATTCAACAAGTGGGAAGCAAGGACAGTCCTTTGATAATAGAGTGCTATAACTTTAATAGCAATGGAAAACATGATTTAATGGGAAAAGTGCAGAGATCTTTGGTGGAGTTGGAGAACATTCATAATAATGGCCAAGGAGAAAATTTATTTTTGCCTTCTGCTGATGGACAAAACCATGATAACAAGGTGTTGAAGAGCCAACTATTTGTGGAAAAATTTACTGAAAGTGTCCAATATACTTTCTTGGATTACTTGGCGGGGGGATTTGAATTGAATTTCATGGTGGCTGTTGACTTTACAGAAGTTCAACATAAATTCACAATTGCTGCACTAGTGGAGGAGTCTGGATGTGTCCTGTTTACCTTGAGGAACCATTTGTGGGTTCCACAAAATGCTAATCCTCTAAGGCCATTGTTGTCAGGCTCAACAGCTGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGACCAAATGCATACCAGAGGGCAATTGTCGAGGTTGGGGAAGTGTTACAGTTGTATGATTCAGACAAACGATTTCCTACTTGGGGATTTGGAGCACGACCAATTGATGGTCCTGTTTGCCATTGTTTCAACTTGAACGGAAGTAGTCATTACTGTGAAGTGGAAGGGATCCAAGGAATTCTGATGGCTTACACAAGTGCCCTGCTTAATGTATCTCTTGCAGGACCTACACTTTTTGGACCGGTCATAAGCACTGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTATTAATAATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTATTGTCAAAGCATCTGACCTGCCATTGTCAATCCTTATTGTTGGGGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAGAGGCTAGAAAGTTCATATGGACGCGTTGCTTCACGTGATATAGTCCAATTTATTCCATTTCGGGAGGTTCAAAGTGGACTTTCAGTTGTTCAAGCATTTCTAGCAGAATTACCGGCTCAATTTTTAACTTACGTGAGGAGCAGAAATATCCAGCCGAACCTCTAG 1869 0.4254 MGNRLSEVAAGRAAIGGIAADFLNLAAAPIDAVENFLRSRGHHGLFSQIELSFSASGLRDRDVLFKSNPMMVLYARGKNGALEELCRTEVVLNSSSPRWITKHTLIYHFEVVQVLVFRVYDVDTQFHNVDIKMLDLDEQQFLGEATCALSQIITQPDKSLTIDLYTEDSVGSTLSKNCGKLMVHGEECISSKTAIEMVFRCSDLEYKYLFSRTDPFLLISKVVEAGAQIPICKTEVIRNDLNPIWKSVFVNIQQVGSKDSPLIIECYNFNSNGKHDLMGKVQRSLVELENIHNNGQGENLFLPSADGQNHDNKVLKSQLFVEKFTESVQYTFLDYLAGGFELNFMVAVDFTEVQHKFTIAALVEESGCVLFTLRNHLWVPQNANPLRPLLSGSTAASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQLYDSDKRFPTWGFGARPIDGPVCHCFNLNGSSHYCEVEGIQGILMAYTSALLNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFIPFREVQSGLSVVQAFLAELPAQFLTYVRSRNIQPNL* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1700 622 Pfam Copine 406 620 IPR010734 -
Gso4g1700 622 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 395 620 - -
Gso4g1700 622 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 6 352 - -
Gso4g1700 622 Pfam C2 domain 198 290 IPR000008 -
Gso4g1700 622 Pfam C2 domain 54 158 IPR000008 -
Gso4g1700 622 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Gso4g1700 622 ProSiteProfiles C2 domain profile. 29 162 IPR000008 -
Gso4g1700 622 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 291 IPR035892 -
Gso4g1700 622 CDD C2B_Copine 195 288 IPR037768 -
Gso4g1700 622 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 164 IPR035892 -
Gso4g1700 622 SUPERFAMILY vWA-like 415 568 IPR036465 -
Gso4g1700 622 CDD C2A_Copine 47 172 - -
Gso4g1700 622 CDD vWA_copine_like 312 609 IPR010734 -
Gso4g1700 622 Gene3D C2 domain 193 315 IPR035892 -
Gso4g1700 622 Gene3D C2 domain 52 192 IPR035892 -
Gso4g1700 622 PANTHER COPINE 395 620 IPR045052 GO:0005544
Gso4g1700 622 PANTHER COPINE 6 352 IPR045052 GO:0005544
Gso4g1700 622 SMART C2_3c 48 161 IPR000008 -
Gso4g1700 622 SMART C2_3c 193 300 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1700 Gso-Chr4 47042612 47051280 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1700 - - gmx:100798141 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1700 4 47042612 47051280 Gso6g1387 6 13607625 13615686 GST
Gso8g0062 8 575696 583603 Gso4g1700 4 47042612 47051280 PCT
Gso4g1700 4 47042612 47051280 Gso8g0062 8 575696 583603 PCT