Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1387 ATGGGAAACTGCTTCTCCGAAGTCGCCGCAGGCCGCGCCGCCATCGGCGGCACCGCCCGCGATTTCCATAATCTTGCCGGCGCTCCAAACGACGCCGTCGATAACTTCCTCAGGTCCCACGGCCACCACGGCCTCTTCTCTCAGATCGAGTTATCGTTTTCCGCTTCTGGCTTGCGTGATCGTGATCTGCTCTTCAAGAGTAATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGGAGCACTTGAGGAGCTTCGCCGCACTGAAGTAGTTCTGAATTCATCAAGCCCCACATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGCTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATATAAAGATGCTTGAGCTAGATGAGCAGCAATTTCTTGGCGAGGCAACCTGTGTACTATCTCAGATAATCACACAACCTGATAAATCATTGACTATAGATCTACACACAGAAGATTCTATCGGATCTACCCTTTCCAAAAACAGTGGGAAACTCATGGTGCATTCTGAGGAATGTATTAGCTCAAAGACTGCAATAGAGATGGCATTCAGGTGTTCAGATTTGGAATACAAGGATCTCTTCTCAAGAAATGACCCCTTTTTATTGATATCAAAAGTTGTGGAAGGTAGTGCCCAGATTCCAATTTGCAAAACAGAAGTTATAAGGAATGATCTCAATCCAATATGGAAGTTGGTGTTTGTGAATATTCAACAAGTGGGAAGCAAGGACAGTCCTTTGGTAGTAGAGTGCTATAACTTCAATAGCAATGGAAAACATGATTTAATGGGAAAAGTGCAGAGATCTTTGGCAGAGTTGGAGAACATTCATAATAATGGCCAAGGAGAAAATTTATTTTTGCCTTCTGCTGATGGACAAAACCATGATAACAAGGTGCTGAAGAGCCAACTATTTGTGGATAAATTTACTGAAAGTGTCCAATACACTTTCTTGGATTACTTGGCAGGGGGATTTGAATTGAACTTCATGGTGGCTGTTGACTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTGTCGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGACAAACGATTTCCTACTTGGGGGTTTGGGGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGCAGTAGTCATTACTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCTTACACAAGTGCCCTGCTTAATGTATCTCTTGCAGGACCTACACTTTTTGGGCCGGTCATAAGCACTGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGGAAGTACTTTGTTTTATTAATAATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTATTGTTAAAGCATCCGACCTGCCATTATCAATTCTTATTGTTGGGGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAGAGGCTAGAAAGTTCATATGGACGCGTTGCTTCACGTGATATAGTCCAATTTGTTCCATTTCGGGAGCTTCAAAGTGGATTTTCAGTTGTTCAAGCACTTCTAGCAGAATTACCGGCTCAGTTTTTAACTTACGTTCGGAGCAGAAATATCCAACCAAGCCTCTAG 1737 0.4289 MGNCFSEVAAGRAAIGGTARDFHNLAGAPNDAVDNFLRSHGHHGLFSQIELSFSASGLRDRDLLFKSNPMMVLYARGKNGALEELRRTEVVLNSSSPTWITKHTLIYHFEVVQALVFRVYDVDTQFHNVDIKMLELDEQQFLGEATCVLSQIITQPDKSLTIDLHTEDSIGSTLSKNSGKLMVHSEECISSKTAIEMAFRCSDLEYKDLFSRNDPFLLISKVVEGSAQIPICKTEVIRNDLNPIWKLVFVNIQQVGSKDSPLVVECYNFNSNGKHDLMGKVQRSLAELENIHNNGQGENLFLPSADGQNHDNKVLKSQLFVDKFTESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFVPFRELQSGFSVVQALLAELPAQFLTYVRSRNIQPSL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1387 578 SMART C2_3c 48 161 IPR000008 -
Gso6g1387 578 SMART C2_3c 198 297 IPR000008 -
Gso6g1387 578 Pfam C2 domain 54 158 IPR000008 -
Gso6g1387 578 Pfam C2 domain 200 292 IPR000008 -
Gso6g1387 578 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Gso6g1387 578 Gene3D C2 domain 195 314 IPR035892 -
Gso6g1387 578 CDD vWA_copine_like 312 565 IPR010734 -
Gso6g1387 578 CDD C2A_Copine 47 166 - -
Gso6g1387 578 SMART VWA_4 341 538 IPR002035 -
Gso6g1387 578 Pfam Copine 362 576 IPR010734 -
Gso6g1387 578 ProSiteProfiles VWFA domain profile. 343 557 IPR002035 -
Gso6g1387 578 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 577 - -
Gso6g1387 578 Gene3D C2 domain 52 194 IPR035892 -
Gso6g1387 578 CDD C2B_Copine 195 288 IPR037768 -
Gso6g1387 578 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Gso6g1387 578 SUPERFAMILY vWA-like 342 524 IPR036465 -
Gso6g1387 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 293 IPR035892 -
Gso6g1387 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 166 IPR035892 -
Gso6g1387 578 PANTHER COPINE 1 577 IPR045052 GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1387 Gso-Chr6 13607625 13615686 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1387 - - gmx:100799074 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1387 6 13607625 13615686 Gso6g1387 6 13607625 13615686 ECH
Gso4g1700 4 47042612 47051280 Gso6g1387 6 13607625 13615686 GST
Gso8g0062 8 575696 583603 Gso6g1387 6 13607625 13615686 PCT
Gso6g1387 6 13607625 13615686 Gso8g0062 8 575696 583603 PCT