Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2039 ATGCATTCCTCGCTCTCTCTCTCGTTCTCCGCGACCTCCTCCTCCGCCGCCACCGTTTCCAGATCACGACACTCATTCCACTCTCCCGCCGTCGCCACGCCTCTCAATCTCCGCTTCTGCGGCTTGAGGCGCGAGGCATTTGCTTCAGGTCTCGCTGCTTCTCGCAACCGCCACCACTCCCACCTCCCTCGCCGCCCTCGCTCCGCCGCAGTCTCTGCCGCGCTTTCTAGCAATGGCATCCCTCCCAAATCGTTCGACTACGATTTGCTTATTATCGGCGCCGGCGTTGGCGGCCACGGCGCCGCGCTTCATGCCGTCGAGAAGGGTTTGAAAACAGCTATTGTGGAAGGAGATGTGGTGGGAGGGACATGTGTGAACCGAGGCTGTGTTCCTTCCAAAGCTCTTTTGGCCGTGAGTGGTCGTATGCGAGAACTAAAGAGCGATCATCACTTGAAGTCCTTTGGCTTACAGGTTTCTGCTGCCGGCTATGACAGACAAGGAGTCGCTGATCATGCTAATAATCTTGCTTCGAAAATCCGTAATAACTTGACCAACTCAATGAAAGCGCTTGGAGTAGACATACTTACTGGTTTTGGAACTATTCTGGGTCCTCAAAAGGTGAAAGTTGGCTCCTCAGACAAAATAGTAACTGCAAAAGATATCATCATTGCTACTGGTTCTGTTCCATTTGTTCCTAAGGGCATTGAAATTGATGGGAAGACTGTGATTACCAGTGATCACGCACTCAAACTGGAATCTGTTCCTGATTGGATAGCAATTGTAGGAAGTGGATATATTGGTCTTGAATTCAGTGATGTATATACAGCACTTGGAAGTGAGGTTACTTTTATAGAAGCTTTAGATCAACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGATCACGCCCGCAAGGGATGGGAAACCTGTCTTGATTGAACTTATTGATGCAAAAACAAAGGAGCCAAAAGACACTCTGGAGGTGGATGCTGCACTAATAGCAACCGGAAGGGCTCCGTTCACACAAGGTCTTGGATTGGAGAATATTGATGTGGTAACACAGCGTGGTTTTGTTCCTGTGGATGAGCGCATGCGAGTAATCGATGCAAATGGCAAGCTGGTGCCTCATTTATACTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGTGGTTGAACAAGTCACTGGAAGAGATCTCGTGCTCAATCATTTAAGCATCCCAGCTGCTTGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGAGAAAGGTGAAAAAGAGGGGTTTGAAGTAAGTGTTGCCAAAACAAGTTTTAAAGCTAACACAAAGGCTCTAGCAGAAAACGAAGGAGAGGGACTAGCCAAGTTGATATATAGACCTGACAATGGAGAGATACTAGGAGTTCATATTTTTGGTTTGCATGCAGCAGATCTCATCCATGAAGCATCCAATGCAATTGCATTAGGGACACGTATTCAGGACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGGTTAAAGCACAAGCTTCTAGCCCAGAGGAAGACACAAACACATTCAGAATCCTGTAA 1722 0.4686 MHSSLSLSFSATSSSAATVSRSRHSFHSPAVATPLNLRFCGLRREAFASGLAASRNRHHSHLPRRPRSAAVSAALSSNGIPPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELKSDHHLKSFGLQVSAAGYDRQGVADHANNLASKIRNNLTNSMKALGVDILTGFGTILGPQKVKVGSSDKIVTAKDIIIATGSVPFVPKGIEIDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFATKITPARDGKPVLIELIDAKTKEPKDTLEVDAALIATGRAPFTQGLGLENIDVVTQRGFVPVDERMRVIDANGKLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDLVLNHLSIPAACFTHPEISMVGLTEPQAREKGEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVKAQASSPEEDTNTFRIL* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2039 573 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 22 562 - -
Gso7g2039 573 Gene3D - 230 357 IPR036188 -
Gso7g2039 573 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 438 549 IPR004099 GO:0045454
Gso7g2039 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 88 110 - -
Gso7g2039 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 120 135 - -
Gso7g2039 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 221 230 - -
Gso7g2039 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 257 282 - -
Gso7g2039 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 351 365 - -
Gso7g2039 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 399 406 - -
Gso7g2039 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 434 455 - -
Gso7g2039 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 503 518 - -
Gso7g2039 573 PRINTS Pyridine nucleotide disulphide reductase class-I signature 525 545 - -
Gso7g2039 573 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 87 557 IPR006258 GO:0004148|GO:0050660
Gso7g2039 573 SUPERFAMILY FAD/NAD(P)-binding domain 75 428 IPR036188 -
Gso7g2039 573 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 437 551 IPR016156 GO:0016491|GO:0050660
Gso7g2039 573 Gene3D - 88 420 IPR036188 -
Gso7g2039 573 PIRSF Hg-II_reductase_MerA 58 553 IPR001100 GO:0016491
Gso7g2039 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 87 419 IPR023753 GO:0016491
Gso7g2039 573 Gene3D - 437 561 IPR016156 GO:0016491|GO:0050660
Gso7g2039 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 89 108 - -
Gso7g2039 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Gso7g2039 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 257 275 - -
Gso7g2039 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 350 366 - -
Gso7g2039 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 384 406 - -
Gso7g2039 573 PANTHER DISULFIDE OXIDOREDUCTASE 22 562 - -
Gso7g2039 573 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 121 131 IPR012999 GO:0016668
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2039 Gso-Chr7 44372294 44378200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2039 1 566 Acyl Lipid Metabolism Gene Families AT3G16950 83.012 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2039 K00382 - gmx:100809578 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2039 7 44372294 44378200 Gso17g0261 17 2362495 2371310 GST
Gso7g2039 7 44372294 44378200 Gso15g1190 15 11816460 11822260 PCT
Gso7g2039 7 44372294 44378200 Gso9g0324 9 3125459 3129944 PCT
Gso15g1190 15 11816460 11822260 Gso7g2039 7 44372294 44378200 PCT
Gso9g0324 9 3125459 3129944 Gso7g2039 7 44372294 44378200 PCT