Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1190 ATGCAATCTTCCATTTCACTCTCTTCTTCCTACGCTCCCACCATTTCGGGACCACGCCACTCTTTTCCCCTCTCCGGTCGCACTCTCGCGCCTTCGAATCTCCGTTTCTGCGGCCTCCGGCGACAGGCATTCACTTCCACTCCCCTCAACCACCACTTCCGCCTCCGCCGACGCCGCCTCCCGCATTCCGCCGCGGTATCCGCCGCGCTTTCCGCCAACGGTACCTCTCCCAAGTCGTTCGACTACGACTTGCTCATCATCGGCGCCGGCGTTGGCGGCCACGGCGCCGCGCTCCACGCCGTCGAGAAGGGTTTGAAAACGGCCATTGTTGAGGGAGACGTGGTTGGAGGGACATGTGTGAACAGAGGATGTGTTCCTTCTAAGGCTCTTTTGGCTGTGAGTGGTCGAATGCGAGAGCTGCGGAATGATCATCACTTGAAGTCGCTGGGTTTGCAGGTTTCTGCTGCTGAGTATGACAGACAAGCAGTTGCTGACCATGCTAATAATCTTGCTTCGAAAATTCGTGGCAACTTGACCAACTCCTTAAAAGCACTTGGAGTGGACATTCTCACTGGTTTTGGAACTATTTTAGGTCCTCAAAAAGTGAAAGTTGTCTCTTCCAACAATGTGGTGACTGCCAAAGACATCATCATTGCCACTGGTTCAGTTCCTTTTGTTCCAAAGGGCATTGAGGTTGATGGAAAGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGACTGTTCCTGATTGGATAGCAATTGTAGGAAGTGGTTATATTGGCCTTGAATTCAGTGATGTATATACGGCCCTTGGAAGTGAGGTTACTTTTATTGAAGCTTTAGACCAGCTCATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTTCTCATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCATCCAAGATCACTCCTGCAAGAGACGGAAAACCTGTCACAATTGAGCTCATTGATGCAAAGACCAAGGAACAGAAGGACACTTTAGAGGTGGATGCTGCACTAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAATATTGATGTTGTAACGCAGCGTGGTTTTGTTCCTGTCGATGAGCGCATGAGAGTACTTGATGCAAATGGAAACCTGGTTCCTCATTTGTATTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGCGCACAAGGAATTTCAGTGGTTGAACAAGTGACCGGAAGAGATCACGTGCTCAATCATTTAAGCATACCAGCTGCTTGTTTCACTCATCCTGAAATCAGCATGGTTGGATTGACAGAGCCTCAAGCAAGGGAGAAAGCTGAAAAGGAGGGTTTTGAAGTAAGTGTTGCCAAAACAAGTTTTAAAGCTAACACAAAGGCCTTAGCTGAAAACGAAGGGGAGGGTCTTGCCAAGTTGATATACAGGCCTGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACGTATTCAGGATATAAAATTTGCAGTACATGCTCATCCAACTTTGTCTGAGGTGCTTGATGAGCTATTTAAGTCAGCAAAGGTTAAAGCAGAAGCTTCTGAGCCAATAAAGGAAGCTGTTGCAGTTTAA 1698 0.477 MQSSISLSSSYAPTISGPRHSFPLSGRTLAPSNLRFCGLRRQAFTSTPLNHHFRLRRRRLPHSAAVSAALSANGTSPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMRELRNDHHLKSLGLQVSAAEYDRQAVADHANNLASKIRGNLTNSLKALGVDILTGFGTILGPQKVKVVSSNNVVTAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLETVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPGFDPEISKLAQRVLINPRNIDYHTGVFASKITPARDGKPVTIELIDAKTKEQKDTLEVDAALIATGRAPFTQGLGLENIDVVTQRGFVPVDERMRVLDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDTGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVKAEASEPIKEAVAV* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1190 565 Pfam Pyridine nucleotide-disulphide oxidoreductase 82 414 IPR023753 GO:0016491
Gso15g1190 565 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 433 544 IPR004099 GO:0045454
Gso15g1190 565 PIRSF Hg-II_reductase_MerA 55 547 IPR001100 GO:0016491
Gso15g1190 565 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 116 126 IPR012999 GO:0016668
Gso15g1190 565 Gene3D - 83 415 IPR036188 -
Gso15g1190 565 PRINTS FAD-dependent pyridine nucleotide reductase signature 84 103 - -
Gso15g1190 565 PRINTS FAD-dependent pyridine nucleotide reductase signature 213 231 - -
Gso15g1190 565 PRINTS FAD-dependent pyridine nucleotide reductase signature 252 270 - -
Gso15g1190 565 PRINTS FAD-dependent pyridine nucleotide reductase signature 345 361 - -
Gso15g1190 565 PRINTS FAD-dependent pyridine nucleotide reductase signature 379 401 - -
Gso15g1190 565 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 432 546 IPR016156 GO:0016491|GO:0050660
Gso15g1190 565 SUPERFAMILY FAD/NAD(P)-binding domain 70 423 IPR036188 -
Gso15g1190 565 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 13 557 - -
Gso15g1190 565 Gene3D - 432 557 IPR016156 GO:0016491|GO:0050660
Gso15g1190 565 TIGRFAM lipoamide_DH: dihydrolipoyl dehydrogenase 82 551 IPR006258 GO:0004148|GO:0050660
Gso15g1190 565 Gene3D - 225 352 IPR036188 -
Gso15g1190 565 PANTHER DISULFIDE OXIDOREDUCTASE 13 557 - -
Gso15g1190 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 83 105 - -
Gso15g1190 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 115 130 - -
Gso15g1190 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 216 225 - -
Gso15g1190 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 252 277 - -
Gso15g1190 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 346 360 - -
Gso15g1190 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 394 401 - -
Gso15g1190 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 429 450 - -
Gso15g1190 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 498 513 - -
Gso15g1190 565 PRINTS Pyridine nucleotide disulphide reductase class-I signature 520 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1190 Gso-Chr15 11816460 11822260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1190 1 556 Acyl Lipid Metabolism Gene Families AT4G16155 81.866 0.0 903
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1190 K00382 - gmx:100803176 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1190 15 11816460 11822260 Gso9g0324 9 3125459 3129944 GST
Gso7g2039 7 44372294 44378200 Gso15g1190 15 11816460 11822260 PCT
Gso17g0261 17 2362495 2371310 Gso15g1190 15 11816460 11822260 PCT
Gso15g1190 15 11816460 11822260 Gso7g2039 7 44372294 44378200 PCT
Gso15g1190 15 11816460 11822260 Gso17g0261 17 2362495 2371310 PCT