Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1992 ATGTTCTTCAGCGGCGATCCTTCGACGCGGAAGCGTGTCGATTTGGGAGGTCGCAGTTCAAAGGAAAGGGACCGGAAGAACCTTCTAGAACAGACGCGAGTTGAACGCAACCGGCGCTTATGGTTGCGCCAGCAGAACTCTGCTGTACTCAAAATTCAGAAATGCTTCAGAGGGAGAAAAGCTGTCAGAACTGAACAATCTAAGGTGCGAGAGCAGTTCTATAAAATCTATGGGAAGCATTGCCAGAACGTGGACAGGAATTCTTTTGGTCCAGATTCTAATTTCCTCTACCAGTTCCTCTATTTCTTTAAGGCAGAAAATATTGATGATTTCTTAGTTCTTGTGCAAATATGCCGGTTGCTTTGGTGGTCTGTTCAGGATAATGGGGTGGATTATTCATCCACACGTGCTTTGGTGAACTTTAGAGTGAAGCGATTTGTACAAGCTTGTATTTGTGCTCTGCATCAGAATAGAAATCAGTTAAAGGATCAGCTTTTATTGACTCCTGAGGAATTGAATGTGTCAGCTATTCCTTTATTGGAGGTTTTAGTATTGTTAATTGATCCCAAATTGCCATGGAGCTGTAAGATAGTTGAATATCTCATTCAAAACAATGCAGTTGGCCTACTCAGAGAGATAATTCTTACAGGAAAGGATAATGCAGAAAATTATTTTTCCATTGGCAAGGGATCATCATTGGAGCGTGTGCTTATTGCTGTAATATGTCATGTTGGTCAGAAGCCATGTATCTGTTCACAAATTAATCCAAGATATAGCTTTGCATCACAGATCATCACTATTCCTTTCTTGTGGCATCTTTTCCCAAATTTACAACAGATTTTTGCCGCAGACGACCTGAACCAATGCTACATTCATCAAATGGCAATGTTTGGGCAAAATCTGATCAATTTGCTACCTAAGGATATATCAACTGAATTTCCGAGCCATGCGTGTATGCTTGGAAATGTATTAGAAACTGCTGGAATTGCTTTGTCCCATCCTAACTGTTCATTTGACATGGTACGGAGCTTATTCACTGCAGCCATAGACCTTGCAGCTGTCACTACATTTTTGCTGGAGGCACTCCCATCTGTGAAAACTTCCAATAGTAGAGAAAGTCCTATGATTGCTGAGGATGATATGACTGGAGACAATGAAGTCATGGAAATAGCTTTAGATAGGAAATTGGAGCAGCAAATTTATAATGCCATAAATCCTCGCTTCCTTCTGCAACTGACAAATATACTATTTAAAGAGATTTCATCTGTCAATGGTTCAGATTATGGACCCAACGATAGAGATGTTACAGCTGTTGATGGGGTTTGTGGGTTTTTGAATGTTACCTTCAACAAACTGCCACTTGAACGGATTATGACAGTGCTAGCTTACAGAACTGAACTTGTTCCAACACTTTGGAATTTTATGAAGCGGTGTCATGAGAACCAAAAATGGTCATCACACTTCTCAAATGATGCACCTGGTTGGCTGTTACCTCTGGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTCGATAATGAAGAATTTTATGAGCAGGAGAAACCGCTATCACTGAAGGACATTAGAAGCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGGGAATCATATCACATCTGCTAATTCGGTAAAATCTGTTCCAGTTAGTTCAGCTAGTAAGGGGCAGTCTGTTCAGACCATTCAACAGAGGGTTAGCATTGTAGTGTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCAGCAGTTTACATCCCCCAGTAACTTCCAGGCTGATGGGGTGAATGACTTATTTAGCTCTCAGGCTGTAATAGAAAATACACGAGCAAATGAAATTTTGAAACAGGCCCCTTTCTTGATACCATTTACGAGCAGGGTTAAAATATTCTCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGACCTCAAGCTGTATTTTCTAGAAATCGGTTCAGAATAAAACGAGATCGTATTTTGGAAGATGCTTATAATCAAATGAGCCAGTTGACAGAAGATAGTCTTCGAGGATCGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGTGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTTCAATATGGATTATTTAAGGAAACAGCGGATCACCTGCTTTATGCTAATCCTGGATCTGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCTTAGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGCATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCTGGAGGAAGGAACCTGCGTGTCACCAATGAAAATGTCATTACTTTTATTCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAAAGTTCACATTTCTTGAGGGGATTTCAGCAACTTATTCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATATTGATGATCTGCGGCTGCATACCAACTATGCAGGAGGCTATCATGGTGAGCATTATGTTATGGAGATGTTTTGGGAAGTTCTCAAAGGCTTTTCACTGGAAAACAGGAAGAAATTTCTGAAGTTTGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGGGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAGCAAGGAGCAATTGGAAACCAAATTACTGTATGCCATAAATGCCGATGCTGGCTTTGATTTAAGTTAA 3078 0.4048 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAVLKIQKCFRGRKAVRTEQSKVREQFYKIYGKHCQNVDRNSFGPDSNFLYQFLYFFKAENIDDFLVLVQICRLLWWSVQDNGVDYSSTRALVNFRVKRFVQACICALHQNRNQLKDQLLLTPEELNVSAIPLLEVLVLLIDPKLPWSCKIVEYLIQNNAVGLLREIILTGKDNAENYFSIGKGSSLERVLIAVICHVGQKPCICSQINPRYSFASQIITIPFLWHLFPNLQQIFAADDLNQCYIHQMAMFGQNLINLLPKDISTEFPSHACMLGNVLETAGIALSHPNCSFDMVRSLFTAAIDLAAVTTFLLEALPSVKTSNSRESPMIAEDDMTGDNEVMEIALDRKLEQQIYNAINPRFLLQLTNILFKEISSVNGSDYGPNDRDVTAVDGVCGFLNVTFNKLPLERIMTVLAYRTELVPTLWNFMKRCHENQKWSSHFSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWGNHITSANSVKSVPVSSASKGQSVQTIQQRVSIVVSELLSQLQDWNNRQQFTSPSNFQADGVNDLFSSQAVIENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRHGPQAVFSRNRFRIKRDRILEDAYNQMSQLTEDSLRGSIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYANPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDIDDLRLHTNYAGGYHGEHYVMEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPMFCIQRASGNAAEESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1992 1025 PANTHER BNAC01G43970D PROTEIN 1 1025 - -
Gso7g1992 1025 Pfam HECT-domain (ubiquitin-transferase) 720 1025 IPR000569 GO:0004842
Gso7g1992 1025 SUPERFAMILY Hect, E3 ligase catalytic domain 653 1017 IPR035983 GO:0004842
Gso7g1992 1025 CDD HECTc 663 1023 IPR000569 GO:0004842
Gso7g1992 1025 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Gso7g1992 1025 Gene3D Hect, E3 ligase catalytic domain 789 868 - -
Gso7g1992 1025 Gene3D Hect, E3 ligase catalytic domains 665 903 - -
Gso7g1992 1025 MobiDBLite consensus disorder prediction 1 22 - -
Gso7g1992 1025 Gene3D Hect, E3 ligase catalytic domain 907 1024 - -
Gso7g1992 1025 ProSiteProfiles HECT domain profile. 684 1025 IPR000569 GO:0004842
Gso7g1992 1025 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1025 IPR044611 GO:0000209|GO:0061630
Gso7g1992 1025 SMART hect_3 682 1025 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1992 Gso-Chr7 43941480 43957195 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1992 K10589 - gmx:100789933 2008.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1992 7 43941480 43957195 Gso17g0311 17 2778193 2796760 GST
Gso7g1992 7 43941480 43957195 Gso15g1148 15 11091424 11127289 PCT
Gso15g1148 15 11091424 11127289 Gso7g1992 7 43941480 43957195 PCT