Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1148 ATGTTCTTCAGCGGCGATTCCTCCACTCGTAAGCGCGTTGATTTAGGTGGCCGCAGCTCGAAGGAACGGGACAGGAATAATCTCCTGGAGCAGACGCGGTTGGAGCGGAACCGGCGCATGTGGTTGCGCCAGCAGAACTCTGCTGCCCTCAGGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACAGAACAATCTAAACTACGAGAGAAATTCCTTAGTATCTATGGCAAAAACTGCCAGAATTTAGACAGGAATGCTTATGCTCCAGGTTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATTTTTTAATTCTTGTGCAAATTTGCCGAATGCTTCAACGGTTTGTTCAAGACAGTGGGGATGTTGTGAGACTTTTTGCTGGTGTGGATTACTCATCCACGTGTGCTTTGGTGAACTACCGAGTGAAGCAATTTGTATATACTTGTATTTGTGCTGTACATCAGAATAGGAATAAGTTGAAGGATCAGCTTTTATTGACTCCAAAGGATTTTAATGCATCAGCTATTCCTTTATTGGAAATCTTAGTATTGTTGATAGATCCCAAACTGCCATGGAGCTGTAAGACAGTAGTATCTCTATCTCAAAACAATGCATTTGGTCTACTTAGAGAGATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAAAAGGGATCATCATTGGAGTGTGTGCTTACTGTTGTAATGTGTCACATCGGTCAGAAGCCATGTATCTGTTCACATACTGATCCACTATATAGCTTCTCATCACAGATTCTTACAATTCCTTTCTTGTGGCATGTTTTTCCAAACTTAAAGCAGGTATTTGCAAAACAGGGCCTGAGCCAACATTACGTTCATCAGATGGCAACATGGGTGCCAAATCTGATTAGTTCTCTACCTAAGGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGATTTGCTTTGTCTCGACCTGACTGTTCCTTTGATATGGCCATAGACCTTGCTGCTGTTATTACATTTTTGCTGGAATCACACCCATCTCTAACAAGATCTGATGGTTCTTCTATTGCTGAGGATGAAATGACTGGCGAAGATGAAGTCATGGAAGTAGCTTTGGATAGGAAATTGAATCAACAAATTTGCAATGCCATAGATACTCGCTTCCTTTTGCAACTGACAAATATATTATTTGGAGATTTTTCATCTGCCAATAGTTCAGATCATGAGCCAGATGACAAGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTCAATACTTTGCCACTCGAAAAGATTATGACTGTGCTTGCCTACCGAACTGAACTTGTTCCTATACTTTGGAATTTTATGAAACGGTGCCATGAGAATGAAAAATGGTCATCTTTGTCTGAACGGTTATCATACCTCTCAGGTGATGCACCTGGTTGGCTGTTGCCTCTTGCTGTATTCTGTCCTGTCTACAAGCACATGCTCATGATAGTTGATAATGAAGAATATTATGAGCAGGAGAAACCGCTATCACTGAAGGATATTAGAAGCCTTATCATTCTGTTAAGGCAGGCTCTGTGGCAGCTAATGTGGGTGAATCATACCACGTCTGCTAATTCAGTAAAATCTGTTCCAGTTAGCCCAGCTATTAAAAAGCAGTCGGAAGCGATTCAACAGAGGGTTAGCATTGTAGTGTCAGAGCTTCTGTCCCAGCTGCAAGATTGGAACAACAGACGACAATTTACATCCCCTACTGACTTCCATGCTGATGGGGTGAATGACTTCTTTATCTCACAGGCTGTTATGGAAAATACACAAGCAAATGAAATTTTGAAGCAGGCTGCTTTCTTGATACCATTTACTAGCAGGGTTAAAATTTTGACTTCTCAACTAGCTGCTGCAAGGCAAAGACATGGGTCTCAGGCTGTTTATACTAGAAACCGGTTCAGAATACGGCGGAATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCAGAAGATGACCTTCGAGGATTGATTCGTGTGGCTTTTGTCAATGAATTGGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACAGCAGATTACCTGCTTTATCCCAATCCTGGATCAGGAATGATACATGAACAACATCTCCAATTTTTCCATTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCTTTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCCTGGACCCAGAATTATATCGTCATCTTATCTTTCTAAAGCATTATGAGCGTGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAACGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAACCTTCGTGTCACCAATGAGAATGTCATTACTTTTATCCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCAGCATACAAACTATGCAGGAGGTTATCATAGTGACCATCATGTTATTGAGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTAGAAAACAAGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCGCGGGGACCATTGCTTGGATTCCAATATCTTGAACCTTTGTTTTGCATCCAAAGGGCTGGTAGTAATGATCCAGACGAAGCTCTTGATCGATTACCTACATCAGCTACTTGCATGAACTTACTAAAGCTTCCACCTTATAAAAGTAAAGAGCAGCTGGAAACCAAATTACTCTATGCCATAAACGCTGATGCTGGCTTTGATTTGAGTTAA 3087 0.403 MFFSGDSSTRKRVDLGGRSSKERDRNNLLEQTRLERNRRMWLRQQNSAALRIQKCFRGRKVVRTEQSKLREKFLSIYGKNCQNLDRNAYAPGSDFLRQFLYFFNAENIDDFLILVQICRMLQRFVQDSGDVVRLFAGVDYSSTCALVNYRVKQFVYTCICAVHQNRNKLKDQLLLTPKDFNASAIPLLEILVLLIDPKLPWSCKTVVSLSQNNAFGLLREIILTGKDNAENCIYSEKGSSLECVLTVVMCHIGQKPCICSHTDPLYSFSSQILTIPFLWHVFPNLKQVFAKQGLSQHYVHQMATWVPNLISSLPKDISDEFPTYACLLGNILETGGFALSRPDCSFDMAIDLAAVITFLLESHPSLTRSDGSSIAEDEMTGEDEVMEVALDRKLNQQICNAIDTRFLLQLTNILFGDFSSANSSDHEPDDKEVAAVGAVCGFLYVIFNTLPLEKIMTVLAYRTELVPILWNFMKRCHENEKWSSLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIILLRQALWQLMWVNHTTSANSVKSVPVSPAIKKQSEAIQQRVSIVVSELLSQLQDWNNRRQFTSPTDFHADGVNDFFISQAVMENTQANEILKQAAFLIPFTSRVKILTSQLAAARQRHGSQAVYTRNRFRIRRNHILEDAYNQMSQLSEDDLRGLIRVAFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADYLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYERDISELELYFVIVNNEYGEQTEEELLPGGKNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTNYAGGYHSDHHVIEMFWEVLKGFSLENKKKFLKFVTGCSRGPLLGFQYLEPLFCIQRAGSNDPDEALDRLPTSATCMNLLKLPPYKSKEQLETKLLYAINADAGFDLS* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1148 1028 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1028 IPR044611 GO:0000209|GO:0061630
Gso15g1148 1028 PANTHER BNAC01G43970D PROTEIN 1 1028 - -
Gso15g1148 1028 Gene3D Hect, E3 ligase catalytic domains 668 906 - -
Gso15g1148 1028 ProSiteProfiles HECT domain profile. 687 1028 IPR000569 GO:0004842
Gso15g1148 1028 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Gso15g1148 1028 CDD HECTc 666 1026 IPR000569 GO:0004842
Gso15g1148 1028 Gene3D Hect, E3 ligase catalytic domain 910 1027 - -
Gso15g1148 1028 MobiDBLite consensus disorder prediction 1 21 - -
Gso15g1148 1028 Pfam HECT-domain (ubiquitin-transferase) 723 1028 IPR000569 GO:0004842
Gso15g1148 1028 SMART hect_3 685 1028 IPR000569 GO:0004842
Gso15g1148 1028 SUPERFAMILY Hect, E3 ligase catalytic domain 657 1020 IPR035983 GO:0004842
Gso15g1148 1028 Gene3D Hect, E3 ligase catalytic domain 792 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1148 Gso-Chr15 11091424 11127289 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1148 K10589 - gmx:100787467 2048.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1992 7 43941480 43957195 Gso15g1148 15 11091424 11127289 PCT
Gso17g0311 17 2778193 2796760 Gso15g1148 15 11091424 11127289 PCT
Gso15g1148 15 11091424 11127289 Gso7g1992 7 43941480 43957195 PCT
Gso15g1148 15 11091424 11127289 Gso17g0311 17 2778193 2796760 PCT