Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0311 ATGTTCTTCAGCGGCGATCCTTTTACACGGAAGCGTGTCGATTTGGGAGGTCGAAGTTCAAAGGAAAGGGACCGGAAAAACCTGTTAGAACAAACACGAGTTGAGCGCAACCGGCGCTTATGGTTGCGCCAGCAGAACTCTGCTGTACTCAAAATTCAGAAATGCTTCAGAGGGAGAAAAGCTGTCAGAACTGAACAATCCAAGTTGCGAGAGCAGTTCTATAAAATCTATGGGAAGTATTGCCAGAATGTGGACAGGAATTCTTTTGGTCCAGATTCTAATTTCCTCTGCCAGTTCCTCTATTTCTTTAAGGCAGAAAATATTGAGGACTTCTTAGTTCTTGTGCAAATATGCCGGTTGCTTTGGTGGTCTGTTCAGGATAATGGGGATGTTGTCAAACTTTTTGCGGGGGTGGATTATTCATCCACACGGGCTTTGGTGAACTACCGAGTGAAGCTATTTGTACAAGCTTGTATTTGTGCTCTGCATCAGAATAGAAATCAGTTAAAAGATCAGCTTTTATTGACTCCTGAGGAATTGAATGTGTCAGCTATTCCTTTATTGGAGGTTTTAGTATTGTTAATTGATCCCAAATTGCCATGGAGCTGTAACCTAGTACAATATCTCATTCAAAACAATGGAGTTGGCCTACTCAGAGAGATAGTTCTTACTGGAAAGGATAATGCAGAAAATTGTTTTTCCATTGGCAAGGGATCATCATTGGAGCGTGTGCTTATTGCTGTAATATCTCATGTTGGTCAGAAGCCATGTATCTGTTCACATATTAATCCAAGATATAGCTCTGCATCACAGATCATCACAATTCCTTTCTTGTGGCATCTCTTCCCAAATTTACAACAGATTTTTGCAGCAAACAACCTGAATCAATGTTACATTCATCAAATGGCAAAGTTTGGGCAAAATCTGATCAAGTTGCTACCTAAGGATATATCAAATGAATTTCCGAGCCATGCGTGTATGCTTGGAAATGTATTAGAAACTGCTGGAATTGCTTTGTCTCATCCTAACTGTTCATTTGATATGGCCGTAGACCTTGTTGCTGTCACTACGTTTTTGCTGGAGGCACTCCCATCTCTGAAAACTTCCAATAGTAGAGAAAGCTCTGTGATTGCTAAGGATGATATGATTGAAGACGATGAAGTCATGGAAATAGCTTTAGATAGTAAATTGGAGCAGCAAATTTATAATGCCATAAATCCTCGCTTCCTTCTGCAACTGACAAATATACTATTTAAAGAGATTTCATCTGTCAATGGCTCAGATTATGGACCCAATGATAGAGATGTTACAGCTGTTGATGGGGTTTGTGGGTTTTTGAATGTTACCTTCAACAAGCTGCCACTTGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTCCAACACTTTGGAATTTTATGAAGCAGTGTCATGAGAACCAAAAATGGTCATCACACCTCTCAAATGATGCACCTGGTTGGCTGTTACCTCTTGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTCGATAATGAAGAATTTTATGAGCAAGAGAAACCGCTATCACTGAAGGACATTAGAAGCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCATATCACATCTGCTAATTCGGTAAAATCTGTTCCAGTTAGTTCAGCTAGTAAGGGGCAGTCTGTTCAGACCATTCAACAGAGGGTTTGCATTGTAGTCTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCCCAGTAACTTCCATGCTGATGGGGTGAATGACTTATTTAGCTCTCAGGCTGTAATAGAAAACACACGAGCAAATGAAATTTTGAAACAGGCCCCTTTCTTGATACCATTTACAAGCAGGGTTAAAATATTCTCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGACCTCAAGCTGTATTTTCTAGAAATCGATTCAGGATACAACGAGATCATATTTTGGAAGATGCTTACAATCAAATGAGTCAGTTGACAGAAGATAGTCTTCGAGGATCGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGTGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAATATGGATTATTTAAGGAAACAGCGGATCACCTGCTTTATCCTAATCCTGGATCTGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTCGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTTTTCTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGCATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCCGGAGGAAGGAACCTACGTGTCACTAATGAGAATGTCATTACTTTTATCCACCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAAAGTTCACATTTCTTGAGGGGATTTCAGCAACTTATGCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATATTGATGATCTGCGGCTGCATACCAACTATGCAGGAGGCTATCATAATGAGCATTTTGTTATGGAGATGTTTTGGGAAGTTCTCAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCTCGTGGGCCTTTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGGGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAGCAAGGAGCAATTGGAAACCAAATTACTGTATGCCATAAATGCTGATGCTGGCTTTGATTTAAGTTAA 3081 0.4012 MFFSGDPFTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAVLKIQKCFRGRKAVRTEQSKLREQFYKIYGKYCQNVDRNSFGPDSNFLCQFLYFFKAENIEDFLVLVQICRLLWWSVQDNGDVVKLFAGVDYSSTRALVNYRVKLFVQACICALHQNRNQLKDQLLLTPEELNVSAIPLLEVLVLLIDPKLPWSCNLVQYLIQNNGVGLLREIVLTGKDNAENCFSIGKGSSLERVLIAVISHVGQKPCICSHINPRYSSASQIITIPFLWHLFPNLQQIFAANNLNQCYIHQMAKFGQNLIKLLPKDISNEFPSHACMLGNVLETAGIALSHPNCSFDMAVDLVAVTTFLLEALPSLKTSNSRESSVIAKDDMIEDDEVMEIALDSKLEQQIYNAINPRFLLQLTNILFKEISSVNGSDYGPNDRDVTAVDGVCGFLNVTFNKLPLERIMTVLAYRTELVPTLWNFMKQCHENQKWSSHLSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWVNHITSANSVKSVPVSSASKGQSVQTIQQRVCIVVSELLSQLQDWNNRRQFTSPSNFHADGVNDLFSSQAVIENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRHGPQAVFSRNRFRIQRDHILEDAYNQMSQLTEDSLRGSIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLMQKDWIDMFNEHELQLLISGSLDSLDIDDLRLHTNYAGGYHNEHFVMEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPMFCIQRASGNAVEESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0311 1026 CDD HECTc 664 1024 IPR000569 GO:0004842
Gso17g0311 1026 PANTHER BNAC01G43970D PROTEIN 1 1026 - -
Gso17g0311 1026 Gene3D Hect, E3 ligase catalytic domain 908 1025 - -
Gso17g0311 1026 Gene3D Hect, E3 ligase catalytic domain 790 869 - -
Gso17g0311 1026 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1026 IPR044611 GO:0000209|GO:0061630
Gso17g0311 1026 Pfam HECT-domain (ubiquitin-transferase) 721 1026 IPR000569 GO:0004842
Gso17g0311 1026 SMART hect_3 683 1026 IPR000569 GO:0004842
Gso17g0311 1026 Gene3D Hect, E3 ligase catalytic domains 666 904 - -
Gso17g0311 1026 SUPERFAMILY Hect, E3 ligase catalytic domain 654 1018 IPR035983 GO:0004842
Gso17g0311 1026 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Gso17g0311 1026 ProSiteProfiles HECT domain profile. 685 1026 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0311 Gso-Chr17 2778193 2796760 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0311 K10589 - gmx:100776303 2034.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0311 17 2778193 2796760 Gso17g0311 17 2778193 2796760 ECH
Gso7g1992 7 43941480 43957195 Gso17g0311 17 2778193 2796760 GST
Gso17g0311 17 2778193 2796760 Gso15g1148 15 11091424 11127289 PCT
Gso15g1148 15 11091424 11127289 Gso17g0311 17 2778193 2796760 PCT