Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0471 ATGAACCAAGAAATGAATGGGGTTGAGGCTGAGAAGAGGCAAGAGAATGGACATGAGAAAGTGGATTATGATGTGCAGGAGAAAATAGACTATGTGTTTAAGGTGGTGGTGATAGGGGACTCAGCAGTTGGCAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAGTTCTGCTTTGACTCAAAGTCCACCATTGGGGTTGAATTCCAGACTAGGACTGTCACTATTAATGGCAAAGTCATCAAAGCTCAGATCTGGGACACTGCTGGCCAAGAAAGGTATAGGGCTGTAACAAGTGCATACTACAGAGGTGCATTAGGGGCAATGCTGGTCTACGACATAACGAAGAGGCAATCGTTTGATCATGTTGCAAGATGGGTTGAGGAGCTGCGTGCACACGCAGATAGCTCCATTGTGATCATGTTGGTGGGGAACAAAGCTGACCTTGTGGACCAGAGAATGGTGCCAACTGAGGATGCAGTGGAGTTTGCTGAGGACCAAGGCCTCTTCTTCTCTGAGACTTCAGCACTCAGTGGTGACAATGTGGAGAGTGCATTTCTCAAATTGCTAGAAGAGATCAATAGGGTAGTGTCCAAAAAGGCTTTGGAATGTGGTTATGGGAAGGAGAATGGTGACAACAATGTTGTTGCCTCACTCAATGGAACAAAGGTTGATATAATCTTGGGTCCTGAATTGGAAATTAGTGAGATGAAGAAATTGTCTTCGTGCTCTTGTTAA 738 0.4485 MNQEMNGVEAEKRQENGHEKVDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLVGNKADLVDQRMVPTEDAVEFAEDQGLFFSETSALSGDNVESAFLKLLEEINRVVSKKALECGYGKENGDNNVVASLNGTKVDIILGPELEISEMKKLSSCSC* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0471 245 PANTHER - 1 245 - -
Gso7g0471 245 CDD Rab11_like 30 193 - -
Gso7g0471 245 Pfam Ras family 34 194 IPR001806 GO:0003924|GO:0005525
Gso7g0471 245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 197 IPR027417 -
Gso7g0471 245 SMART rho_sub_3 35 199 IPR001806 GO:0003924|GO:0005525
Gso7g0471 245 ProSiteProfiles small GTPase Ras family profile. 27 228 IPR001806 GO:0003924|GO:0005525
Gso7g0471 245 ProSiteProfiles small GTPase Rho family profile. 26 197 - -
Gso7g0471 245 TIGRFAM small_GTP: small GTP-binding protein domain 32 186 IPR005225 GO:0005525
Gso7g0471 245 SMART ras_sub_4 30 196 - -
Gso7g0471 245 SMART arf_sub_2 18 197 - -
Gso7g0471 245 SMART ran_sub_2 38 240 - -
Gso7g0471 245 PANTHER RAS-RELATED PROTEIN RABA3 1 245 - -
Gso7g0471 245 Gene3D - 25 224 IPR027417 -
Gso7g0471 245 ProSiteProfiles small GTPase Rab1 family profile. 28 235 - -
Gso7g0471 245 PRINTS Transforming protein P21 ras signature 33 54 - -
Gso7g0471 245 PRINTS Transforming protein P21 ras signature 56 72 - -
Gso7g0471 245 PRINTS Transforming protein P21 ras signature 74 96 - -
Gso7g0471 245 PRINTS Transforming protein P21 ras signature 136 149 - -
Gso7g0471 245 PRINTS Transforming protein P21 ras signature 171 193 - -
Gso7g0471 245 SMART rab_sub_5 33 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0471 Gso-Chr7 4679384 4681397 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0471 K07904 - gmx:100799439 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0471 7 4679384 4681397 Gso7g0471 7 4679384 4681397 ECH
Gso7g0471 7 4679384 4681397 Gso16g0177 16 2036968 2039038 GST
Gso19g2172 19 50171983 50174245 Gso7g0471 7 4679384 4681397 PCT
Gso3g2211 3 47267715 47269958 Gso7g0471 7 4679384 4681397 PCT
Gso7g0471 7 4679384 4681397 Gso19g2172 19 50171983 50174245 PCT
Gso7g0471 7 4679384 4681397 Gso3g2211 3 47267715 47269958 PCT