Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2172 ATGAATCAGGAAATGAATGGGGTTGAGGCTGAGAGGGTGAAAGTGAATGTGCATGACAAAATAGATTACGTGTTTAAGGTGGTGGTGATAGGGGACTCAGCAGTGGGTAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAATTCTGCTTTAACTCAAAGTCTACCATTGGAGTTGAGTTCCAGACTAGAAGTGTGACAATTAATGGCAAAGTCATCAAAGCCCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCAGTGACAAGTGCATACTACAGAGGTGCATTAGGGGCCATGCTAGTGTACGACATTACTAAAAGACAGTCTTTTGATCATGTGGCTAGGTGGGTTGACGAATTGCGAGCACACGCCGACAGTTCCATTGTGATCATGCTCATTGGGAACAAAGGTGACCTTGTGGACCAAAGAGTGGTACACGCCGAAGATGCAGTGGAGTTTGCAGAGGATCAGGGCCTCTTTTTCTCTGAGACTTCAGCTCTCAGTGGTGAAAATGTGGAGAGTTCCTTTTTCAAGTTGCTGGAAGAGATCCATAGGGTTATCTCAAAAAGGTCCTTGGAATGTGATAATGGGAAGGCCAATGCTGACAACAATGTTGCCACTCTTAAAGGGTCAAAAATAGATGTAATCTCAGGTGCTGAATTGGAAATTGCAGAGATGAAGAAGTTGTCTTCATGTTCTTGTTAA 711 0.4402 MNQEMNGVEAERVKVNVHDKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFNSKSTIGVEFQTRSVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVDELRAHADSSIVIMLIGNKGDLVDQRVVHAEDAVEFAEDQGLFFSETSALSGENVESSFFKLLEEIHRVISKRSLECDNGKANADNNVATLKGSKIDVISGAELEIAEMKKLSSCSC* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2172 236 TIGRFAM small_GTP: small GTP-binding protein domain 24 178 IPR005225 GO:0005525
Gso19g2172 236 ProSiteProfiles small GTPase Ras family profile. 19 236 IPR001806 GO:0003924|GO:0005525
Gso19g2172 236 ProSiteProfiles small GTPase Rho family profile. 18 189 - -
Gso19g2172 236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 191 IPR027417 -
Gso19g2172 236 SMART ran_sub_2 30 231 - -
Gso19g2172 236 Pfam Ras family 26 186 IPR001806 GO:0003924|GO:0005525
Gso19g2172 236 SMART arf_sub_2 6 189 - -
Gso19g2172 236 SMART rab_sub_5 25 188 - -
Gso19g2172 236 PRINTS Transforming protein P21 ras signature 25 46 - -
Gso19g2172 236 PRINTS Transforming protein P21 ras signature 48 64 - -
Gso19g2172 236 PRINTS Transforming protein P21 ras signature 66 88 - -
Gso19g2172 236 PRINTS Transforming protein P21 ras signature 128 141 - -
Gso19g2172 236 PRINTS Transforming protein P21 ras signature 163 185 - -
Gso19g2172 236 SMART rho_sub_3 27 191 IPR001806 GO:0003924|GO:0005525
Gso19g2172 236 ProSiteProfiles small GTPase Rab1 family profile. 20 234 - -
Gso19g2172 236 SMART ras_sub_4 22 188 - -
Gso19g2172 236 Gene3D - 17 219 IPR027417 -
Gso19g2172 236 PANTHER RAS-RELATED PROTEIN RABA3 1 236 - -
Gso19g2172 236 CDD Rab11_like 22 186 - -
Gso19g2172 236 PANTHER - 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2172 Gso-Chr19 50171983 50174245 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2172 K07904 - gmx:100797794 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2172 19 50171983 50174245 Gso3g2211 3 47267715 47269958 GST
Gso19g2172 19 50171983 50174245 Gso7g0471 7 4679384 4681397 PCT
Gso19g2172 19 50171983 50174245 Gso16g0177 16 2036968 2039038 PCT
Gso7g0471 7 4679384 4681397 Gso19g2172 19 50171983 50174245 PCT
Gso16g0177 16 2036968 2039038 Gso19g2172 19 50171983 50174245 PCT