Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0177 ATGAACCCAGAAATGAATGGGGTTGAGGCTGAGAAGAGGCAAGAGAATGGACATGAGAAAGTGGATTATGATGTGCAAGAGAAAATAGACTATGTTTTTAAGGTGGTGGTGATAGGGGACTCAGCAGTTGGAAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAGTTCTGCTTTGACTCAAAGTCCACCATTGGGGTTGAATTCCAGACTAGGACTGTCACTATTAATGCCAAAGTCATCAAAGCTCAGATCTGGGACACTGCTGGCCAGGAAAGGGCTGTAACAAGTGCATACTACAGAGGTGCATTAGGGGCAATGCTTGTCTACGACATAACGAAGAGGCAATCGTTTGATCATGTAGCGAGATGGGTGGAGGAGCTGCGTGCGCACGCAGATAGCTCCATTGTGATCATGTTGGTTGGGAACAAAGCTGATCTTGTGGACCAGAGAATGGTACCAACTGAGGATGCAGTGGAGTTTGCTGAGGACCAAGGCCTCTTCTTCTCCGAGACTTCAGCTCTCAGTGGTGACAATGTGGAGAGTGCATTTCTCAAATTGCTAGAAGAGATCAATAGGGTAGTGTCCAAAAAGGCTTTGGAATGTGGTTTAGGGAAGGAGAATGGTGACACCAATGTTGCCTCACTCAAAGGAACAAAGGTTGATATAATCTTAGGTCCTGAATTGGAAATTAGTGAGATGAAGAAATTGTCTTCGTGCTCTTGTTAA 729 0.4486 MNPEMNGVEAEKRQENGHEKVDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINAKVIKAQIWDTAGQERAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLVGNKADLVDQRMVPTEDAVEFAEDQGLFFSETSALSGDNVESAFLKLLEEINRVVSKKALECGLGKENGDTNVASLKGTKVDIILGPELEISEMKKLSSCSC* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0177 242 ProSiteProfiles small GTPase Ras family profile. 27 225 IPR001806 GO:0003924|GO:0005525
Gso16g0177 242 ProSiteProfiles small GTPase Rho family profile. 26 195 - -
Gso16g0177 242 Gene3D - 25 220 IPR027417 -
Gso16g0177 242 PRINTS Transforming protein P21 ras signature 33 54 - -
Gso16g0177 242 PRINTS Transforming protein P21 ras signature 56 72 - -
Gso16g0177 242 PRINTS Transforming protein P21 ras signature 74 96 - -
Gso16g0177 242 PRINTS Transforming protein P21 ras signature 134 147 - -
Gso16g0177 242 PRINTS Transforming protein P21 ras signature 169 191 - -
Gso16g0177 242 ProSiteProfiles small GTPase Rab1 family profile. 28 232 - -
Gso16g0177 242 SMART rab_sub_5 33 194 - -
Gso16g0177 242 SMART ran_sub_2 38 234 - -
Gso16g0177 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 194 IPR027417 -
Gso16g0177 242 SMART ras_sub_4 30 194 - -
Gso16g0177 242 PANTHER RAS-RELATED PROTEIN RABA3 1 242 - -
Gso16g0177 242 Pfam Ras family 34 192 IPR001806 GO:0003924|GO:0005525
Gso16g0177 242 CDD Rab11_like 30 191 - -
Gso16g0177 242 TIGRFAM small_GTP: small GTP-binding protein domain 32 184 IPR005225 GO:0005525
Gso16g0177 242 PANTHER - 1 242 - -
Gso16g0177 242 SMART rho_sub_3 35 197 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0177 Gso-Chr16 2036968 2039038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0177 K07904 - gmx:121173763 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0471 7 4679384 4681397 Gso16g0177 16 2036968 2039038 GST
Gso19g2172 19 50171983 50174245 Gso16g0177 16 2036968 2039038 PCT
Gso3g2211 3 47267715 47269958 Gso16g0177 16 2036968 2039038 PCT
Gso16g0177 16 2036968 2039038 Gso19g2172 19 50171983 50174245 PCT
Gso16g0177 16 2036968 2039038 Gso3g2211 3 47267715 47269958 PCT