Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2508 ATGGATTCTACATCAGTTCACAAGGACATAGATGAACCTTTGCTGGTCTCAGACGAACCTTCATCACCACAACCACCTTCTTTTACTCAATCATTCAGCTCAAGGCATGGATCAGATGGTGAACTTGAGCGAATACTCTCAAACACCAGCGTCCCTTTCGCCAAGCGTATTGGACCGGCAACATGGGTGGAGTTGAAGTTCTTGTTTCACCTTGCTGCTCCTGCTGTTATCGTCTACCTTATCAACTATGTCATGTCTATGTCCACGCAAATCTTTTCAGGCCACCTTGGTAACCTCGAACTTGCTGCTGCTTCTCTCGGAAACACTGGCATCCAAGTCTTTGCTTATGGCCTCATGTTGGGAATGGGGAGTGCAGTGGAAACACTATGTGGACAAGCATACGGTGCTAAAAAATTCAACATGTTAGGCATATACTTGCAAAGATCAACGGTGCTTCTCACACTAGCAGGCATTCTTCTAACCATCATATACATCTTCTCCGAGCCCATCTTAATCTTCCTAGGAGAATCCCCAAGAATCGCGTCGGCAGCAGCACTTTTCGTCTACGGCCTAATCCCTCAAATCTTCGCCTACGCTATAAACTTCCCAATTCAAAAATTCCTCCAAGCTCAGAGCATAGTGGCTCCAAGTGCATACATTTCAGCAGCAACGTTGTTGGTCCACCTCGTATTAAGTTATGTTGTTGTGTATAAGGTGGGGCTTGGTCTGTTGGGTGCATCTTTGGTGTTGAGTGTTTCGTGGTGGATCATTGTGATTGCGCAGTTTGTGTACATTGTGAAGAGTGAGAGGTGTAAGCACACGTGGAGAGGGTTCAGTTTTCAAGCATTTTCGGGGTTAGCAGAGTTTTTTAAGTTGTCTGCAGCTTCAGCGGTGATGCTGTGCTTAGAAACGTGGTACTTCCAAATTTTGGTTCTGCTTGCAGGATTGCTTCCTCACCCTGAGTTGGCTCTGGATTCTCTTTCTATTTGTACCACATTTTCTGGATGGGTTTTCATGATCTCAGTTGGATTTAACGCAGCTGCAAGTGTGAGAGTGAGCAATGAACTAGGGGCAAGAAATCCAAAATCAGCATCATTTTCGGTGATGGTGGTGACATTGATTTCTTTCATAATATCGGTGATTGTAGCACTTGTGGTGCTGGCAATACGAGATATCATTAGCTATGCTTTCACAGACGGTGAAGAGGTGGCTGCTGCTGTCTCAGATCTTTGTCCTCTCCTTGCTCTTTCTATTGTTCTCAATGGCATTCAGCCTGTCTTATCTGGGGTGGCTGTTGGATGTGGATGGCAAACTTTTGTTGCATATGTCAACGTTGGTTGTTATTATGGAATTGGCATACCATTGGGTTCGGTTCTCGGTTTCTATTTCAAACTCAGTGCTAAGGGAATATGGTTGGGAATGCTAGGTGGCACGGTTTTGCAAACAATTATTTTAGTGTGGGTCACATTTCGAACGGATTGGAATAATGAGGTTGAAGAAGCAGCAAAGAGGTTGAACAAGTGGGAGAACAAAACAGAGCCACTTGTGAACTGA 1554 0.4479 MDSTSVHKDIDEPLLVSDEPSSPQPPSFTQSFSSRHGSDGELERILSNTSVPFAKRIGPATWVELKFLFHLAAPAVIVYLINYVMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAKKFNMLGIYLQRSTVLLTLAGILLTIIYIFSEPILIFLGESPRIASAAALFVYGLIPQIFAYAINFPIQKFLQAQSIVAPSAYISAATLLVHLVLSYVVVYKVGLGLLGASLVLSVSWWIIVIAQFVYIVKSERCKHTWRGFSFQAFSGLAEFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTFSGWVFMISVGFNAAASVRVSNELGARNPKSASFSVMVVTLISFIISVIVALVVLAIRDIISYAFTDGEEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGSVLGFYFKLSAKGIWLGMLGGTVLQTIILVWVTFRTDWNNEVEEAAKRLNKWENKTEPLVN* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2508 517 TIGRFAM matE: MATE efflux family protein 74 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso6g2508 517 MobiDBLite consensus disorder prediction 1 15 - -
Gso6g2508 517 MobiDBLite consensus disorder prediction 21 36 - -
Gso6g2508 517 PANTHER PROTEIN DETOXIFICATION 19 505 - -
Gso6g2508 517 MobiDBLite consensus disorder prediction 1 38 - -
Gso6g2508 517 CDD MATE_eukaryotic 64 500 IPR045069 GO:0042910|GO:1990961
Gso6g2508 517 Pfam MatE 74 234 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso6g2508 517 Pfam MatE 296 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso6g2508 517 Coils Coil 491 511 - -
Gso6g2508 517 PANTHER MULTIDRUG RESISTANCE PROTEIN 19 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2508 Gso-Chr6 46814128 46820931 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2508 K03327 - gmx:100790437 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0816 12 8642197 8662228 Gso6g2508 6 46814128 46820931 GST
Gso12g1638 12 39967155 39971395 Gso6g2508 6 46814128 46820931 PCT
Gso6g2508 6 46814128 46820931 Gso12g1638 12 39967155 39971395 PCT