Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0816 ATGGATTCTACATCAGTTCACAAGGACATTGATGAACCTTTGCTGGTCTCAAACGAACCTTCACCAGAGCCACCTTCTTGTACTCAATCATTCAGCTCAAAGCATGGATCAGATGGTGAACTTGAGCGAATACTCTCAAACACTAGCGTCCCTTTCGCGAAGCGTCTTGGACCGGCAACATGGGTGGAGTTGAAGCTCTTGTTTCACCTTGCTGCTCCTGCTGTTATCGTCTACCTTATCAACTATGTCATGTCCATGTCCACACAAATCTTTTCAGGCCACCTCGGTAACCTTGAACTTGCTGCTGCTTCTCTTGGAAACACCGGCATCCAAGTCTTCGCTTATGGCCTCATGTTAGGAATGGGAAGTGCTGTTGAGACACTATGTGGACAAGCATACGGTGCCAAAAAATTCGACATGTTAGGCATATACCTGCAAAGATCAACGGTGCTTCTGACGCTAGCAGGCATTATTCTAACCATCATATACATCTTCTCCGAACCCATTCTAATCTTCCTAGGAGAATCCCCAAGAATCGCATCCGCAGCAGCACTTTTCGTCTACGGCCTAATCCCTCAAATCTTCGCTTACGCTGTAAACTTCCCCATTCAAAAATTCCTCCAAGCCCAGAGCATTGTGGCTCCAAGCGCATACATTTCAACAGCAACGTTGTTGGTCCATCTTGTGTTGAGTTATTTTGTTGTGTACGAGGTGGGGCTTGGTCTGTTGGGTGCGTCGCTGGTGTTGAGTGTTTCGTGGTGGATCATTGTGATTGCACAGTTTGTGTACATTGTCAAGAGTGAAAAGTGTAAGCACACTTGGAGAGGGTTCAGTTTTCAAGCGTTTTCGGGCTTGCCAGAGTTTTTTAAGCTGTCTGCTGCTTCGGCGGTGATGCTCTGCCTAGAGACCTGGTACTTCCAAATTTTGGTTCTGCTTGCAGGGTTGCTTCCTCACCCTGAGTTGGCTCTGGATTCTCTATCTATTTGTACCACAGTGTCTGGATGGGTTTTTATGATCTCAGTTGGATTTAACGCAGCTGCAAGTGTGAGAGTGAGCAATGAACTAGGGGCAAGAAATCCAAAATCAGCGTCATTTTCGGTTGTGGTGGTGACATTGATTTCTTTCATAATATCAGTTATTGTAGCACTTGTGGTGCTGGCAATAAGAGATGTCATTAGCTATGCCTTCACAGACGGTGAAGAGGTGGCTGCTGCTGTCTCAGATCTTTGTCCTCTACTTGCTCTTTCTATTATTCTCAACGGCATTCAACCTGTCTTATCTGGGGTGGCTGTTGGATGTGGATGGCAAACTTTTGTTGCGTATGTGAACGTTGGTTGTTATTATGGAATTGGCATACCATTGGGTTCGGTTCTCGGTTTCTATTTCAAACTCAGTGCTAAGGGAATATGGTTGGGAATGCTAGGTGGCACGGTTTTGCAAACAATTATTTTAGTGTGGGTCACATTTGGAACGGATTGGAATAAAGAGGTTGAAGAAGCAACAAAGAGGCTGAACAAGTGGGAGGACAAAACGGAGCCACTTGTCAAGAACTAA 1554 0.455 MDSTSVHKDIDEPLLVSNEPSPEPPSCTQSFSSKHGSDGELERILSNTSVPFAKRLGPATWVELKLLFHLAAPAVIVYLINYVMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAKKFDMLGIYLQRSTVLLTLAGIILTIIYIFSEPILIFLGESPRIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSAYISTATLLVHLVLSYFVVYEVGLGLLGASLVLSVSWWIIVIAQFVYIVKSEKCKHTWRGFSFQAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTVSGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTLISFIISVIVALVVLAIRDVISYAFTDGEEVAAAVSDLCPLLALSIILNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGSVLGFYFKLSAKGIWLGMLGGTVLQTIILVWVTFGTDWNKEVEEATKRLNKWEDKTEPLVKN* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0816 517 PANTHER PROTEIN DETOXIFICATION 18 504 - -
Gso12g0816 517 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 504 - -
Gso12g0816 517 MobiDBLite consensus disorder prediction 21 35 - -
Gso12g0816 517 CDD MATE_eukaryotic 63 499 IPR045069 GO:0042910|GO:1990961
Gso12g0816 517 TIGRFAM matE: MATE efflux family protein 73 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso12g0816 517 Coils Coil 490 510 - -
Gso12g0816 517 MobiDBLite consensus disorder prediction 1 38 - -
Gso12g0816 517 Pfam MatE 73 232 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso12g0816 517 Pfam MatE 295 455 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0816 Gso-Chr12 8642197 8662228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0816 K03327 - gmx:100801718 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0816 12 8642197 8662228 Gso12g0816 12 8642197 8662228 ECH
Gso12g0816 12 8642197 8662228 Gso6g2508 6 46814128 46820931 GST
Gso12g1638 12 39967155 39971395 Gso12g0816 12 8642197 8662228 PCT
Gso12g0816 12 8642197 8662228 Gso12g1638 12 39967155 39971395 PCT