Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1638 ATGGGTTCAGCGGAGAAAGAGCCACTGTTAACAGCGGAGGGAACTCGATCAAACTCAAAGCACGAGTCCTCCTCCCATGGGCAACTTGAGAGAATTCTCTCCGACGACACCCTACCCTTCCTCAACCGTGTGGGACCCGCCACGTGGATCGAGTTGAAGCTCCTCTTCTTCCTCGCCGCCCCTGCCGTCATCGTCTACCTCATCAACTACCTCATGTCCATGTCCACCCAAATCTTCTCCGGCCACCTCGGCAACCTCGAACTCGCCGCCGCCTCCCTCGGCAACACCGGCATCCAAATGTTCGCCTACGGCCTCATGTTGGGTATGGGGAGTGCCGTGGAGACGCTATGCGGACAAGCATTCGGAGCTCAAAAGTACGGGATGTTAGGAGTCTACATGCAGCGGTCAACGATTCTTCTCTCACTAGCCGGCGTAGTGTTGACCGTGATATACGTATTCAGCGAACCGATGCTAATATTCCTCGGGGAATCACCGAGAATCGCGTCGGCGGCAGCACTCTTTGTGTACGGGTTGATCCCACAGATATTCGCATACGCGGCGAACTTCCCGATCCAGAAGTTTCTCCAAGCGCAGAGCATAGTGGCACCGAGCGCGTACATATCAGCGGCGACGCTGGTGGTCCACCTGGGGATGAGTTGGGTGGCGGTGTACGAGATTGGGTTGGGGCTGTTGGGGGCGTCGCTGGTGCTGAGCCTGTCGTGGTGGATAATGGTGATTGGACAGTACGTGTACATAGTGAAGAGCGAGAGGTGCAGGCGCACGTGGCAGGGGTTCACGTGGGAGGCGTTTAGCGGTTTGTATGGGTTCTTCAAGCTCTCCGCTGCGTCCGCGGTCATGCTGTGCCTGGAGACATGGTACTTTCAGATTCTGGTTTTGCTCGCGGGGCTTCTCCCTAATCCTGAGTTGGCTCTTGATTCCCTTTCTATCTGCACCACAATTTCTGGATGGGTGTTCATGATCTCTGTTGGATTCAATGCAGCTGCAAGCGTGAGGGTGAGCAACGAACTAGGAGCAAGAAGTCCAAAATCAGCATCGTTTTCGGTGGTTGTGGTGACAGTGATTTCTTTCATAATATCAGTAATTGCAGCACTGGTGGTTCTTGCATTAAGAGATGTCATTAGCTATGCCTTCACAGGGGGTGAAGAGGTTGCTGCTGCAGTTTCAGATCTTTGTCCACTCCTTGCCCTTTCTCTTGTCCTCAATGGCATTCAACCCGTCTTATCTGGGGTGGCTGTTGGATGTGGATGGCAAGCTTTCGTAGCTTATGTAAACGTGGGTTGTTATTATGGAGTTGGCATACCATTGGGCGCGGTTCTCGGCTTTTATTTTCAATTTGGTGCCAAGGGAATATGGCTGGGAATGCTAGGTGGCACCGTTATGCAAACAATTATTCTACTGTGGGTCACATTTAGAACGGATTGGACTAAGGAGGTAGAGGAAGCAGCCAAGAGGCTGACCAAATGGGAGGACAAGAAGGAACCACTACTAAATTGA 1515 0.5267 MGSAEKEPLLTAEGTRSNSKHESSSHGQLERILSDDTLPFLNRVGPATWIELKLLFFLAAPAVIVYLINYLMSMSTQIFSGHLGNLELAAASLGNTGIQMFAYGLMLGMGSAVETLCGQAFGAQKYGMLGVYMQRSTILLSLAGVVLTVIYVFSEPMLIFLGESPRIASAAALFVYGLIPQIFAYAANFPIQKFLQAQSIVAPSAYISAATLVVHLGMSWVAVYEIGLGLLGASLVLSLSWWIMVIGQYVYIVKSERCRRTWQGFTWEAFSGLYGFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSLSICTTISGWVFMISVGFNAAASVRVSNELGARSPKSASFSVVVVTVISFIISVIAALVVLALRDVISYAFTGGEEVAAAVSDLCPLLALSLVLNGIQPVLSGVAVGCGWQAFVAYVNVGCYYGVGIPLGAVLGFYFQFGAKGIWLGMLGGTVMQTIILLWVTFRTDWTKEVEEAAKRLTKWEDKKEPLLN* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1638 504 Pfam MatE 283 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso12g1638 504 Pfam MatE 61 221 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso12g1638 504 CDD MATE_eukaryotic 51 487 IPR045069 GO:0042910|GO:1990961
Gso12g1638 504 Coils Coil 478 498 - -
Gso12g1638 504 PANTHER PROTEIN DETOXIFICATION 14 491 - -
Gso12g1638 504 MobiDBLite consensus disorder prediction 1 28 - -
Gso12g1638 504 TIGRFAM matE: MATE efflux family protein 61 458 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso12g1638 504 PANTHER MULTIDRUG RESISTANCE PROTEIN 14 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1638 Gso-Chr12 39967155 39971395 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1638 K03327 - gmx:100795338 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1638 12 39967155 39971395 Gso12g0816 12 8642197 8662228 PCT
Gso12g1638 12 39967155 39971395 Gso6g2508 6 46814128 46820931 PCT
Gso12g0816 12 8642197 8662228 Gso12g1638 12 39967155 39971395 PCT
Gso6g2508 6 46814128 46820931 Gso12g1638 12 39967155 39971395 PCT