LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso6g2484	ATGTCTAGGTTTTTTGGATTCTTCTTTGTGGGTCTTACGTTGTTGTTGGTCGGTGTGGCAAATGCTATGGCTAACTCTTCCAACAAATTTGATCAACTCTTCCAACCAAGTTGGGCTTTTGACCACTTTATTCATGAAAGGGATCTTCTCAAACTCAAACTTGACAAATTTTCCGGGGCTGGTTTTACTTCCAAGAGCAAGTATATGTTTGGGAAAGTTACCATCCAGCTTAAGCTCGTGGAAGGTGACTCTGCTGGAACAGTCACTGCTTTCTATATGTCATCGGACGGTCCAAGCCACAACGAGTTTGATTTTGAGTTTCTAGGCAACATCACAGGGGAACCTTACTCGGTCCAAACCAACGTGTATGTGAACGGTGTGGGCAACAGGGAGCAAAGGCTCAACCTTTGGTTCGACCCCACCAAGGATTTTCACTCATACTCTATCTTCTGGAATCAACGTCAAGTTGTATTTTTGGTGGATGAGACACCAATAAGGGTGCACACAAACATGGAGCACAAGGGAATTCCATTTCCTAAGGATCAACCCATGGGTGTGTATAGTTCAATTTGGAATGCTGATGATTGGGCCACGCAGGGTGGTCGCGTAAAAACAGATTGGAGCCACGCACCCTTCATTGCCACATACAAGAACTTTGAGATCAATGCTTGTGAGTGTCCCGTGTCAGTGGCTGCAATGGATAATGCTAAGAAGTGCACTAGCAGTGAGGGCAAGAAGTATTGGTGGGATGAGCCTAATTTGGCTGAACTCAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAGGGCAAGACACATTTTCTATGACTATTGCACTGACACTGCTAGGTTCCCGGTCTCGCCTGCTGAGTGTGTCCATCACCGTCACAACTGA	894	0.4609	MSRFFGFFFVGLTLLLVGVANAMANSSNKFDQLFQPSWAFDHFIHERDLLKLKLDKFSGAGFTSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPSHNEFDFEFLGNITGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPFPKDQPMGVYSSIWNADDWATQGGRVKTDWSHAPFIATYKNFEINACECPVSVAAMDNAKKCTSSEGKKYWWDEPNLAELNLHQSHQLMWVRARHIFYDYCTDTARFPVSPAECVHHRHN*	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso6g2484	297	PIRSF	EndGlu_transf	2	296	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Gso6g2484	297	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	8	295	-	-
	Gso6g2484	297	CDD	GH16_XET	26	291	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Gso6g2484	297	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	21	216	IPR000757	GO:0004553\|GO:0005975
	Gso6g2484	297	Gene3D	-	16	297	-	-
	Gso6g2484	297	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	244	291	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Gso6g2484	297	PRINTS	Glycosyl hydrolase family 16 signature	60	78	IPR008264	GO:0004553\|GO:0005975
	Gso6g2484	297	PRINTS	Glycosyl hydrolase family 16 signature	118	131	IPR008264	GO:0004553\|GO:0005975
	Gso6g2484	297	PRINTS	Glycosyl hydrolase family 16 signature	136	153	IPR008264	GO:0004553\|GO:0005975
	Gso6g2484	297	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	8	295	IPR044791	GO:0004553
	Gso6g2484	297	Pfam	Glycosyl hydrolases family 16	33	208	IPR000757	GO:0004553\|GO:0005975
	Gso6g2484	297	SUPERFAMILY	Concanavalin A-like lectins/glucanases	30	295	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso6g2484	Gso-Chr6	46602653	46605261	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso6g2484	60	296	Glycoside Hydrolase	AT4G03210	73.840	6.15e-138	388

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso6g2484	K08235		-	gmx:100786906	616.305

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso12g0836	12	9032831	9035281	Gso6g2484	6	46602653	46605261	GST
	Gso6g2484	6	46602653	46605261	Gso12g1667	12	40270092	40272567	PCT
	Gso6g2484	6	46602653	46605261	Gso11g3195	11	47749545	47751740	PCT