Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1667 ATGTCCAAGGTGTTGGGAGTGTTTGTGGGACTTTTGTTGGTGGGGTTGGCTGCCTCTGCCAAGTTTGATGAACTCTTCCAGCCCAGTTGGGCTATGGACCATTTCATCCATGAAGGAGAACTCCTCAAACTCAAACTTGATAACTATTCTGGTGCTGGATTTGGATCTAAGAGCAAATATATGTTTGGAAAAGTGACCATCCTGCTCAAGCTTGTGGAGGGTGACTCTGCTGGAACTGTCACTGCTTTCTATATGTCATCAGACGGCCCAACTCACAACGAATTTGATTTCGAGTTTCTGGGCAACACCACAGGTGAACCTTACTCAGTCCAAACCAACGTGTATGTGAATGGCGTTGGCAACAGGGAGCAGAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTTTTCCTAGTGGATGAGACGCCAATAAGGGTGCACACGAATCTGGAACACAAGGGCATTCCCTTCCCGAAGGACCAAGCCATGGGCGTGTACAGTTCCATCTGGAACGCAGACGATTGGGCAACGCAGGGTGGTCGTGTGAAGACAGATTGGAGCCACGCACCCTTCGTTGCTACCTACAAGGACTTCCAAATTGACGCGTGCGAGTGCCCCGTGCCGGTGACGTCAGCAGATAGCGCTAAGAAATGTAGCAGCAGCGAGGACAACAAGTACTGGTGGGACCAACCAACGTTGTCTGAACTGAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAGGGCTAACCATATGCTGTATGATTATTGCGCCGACACTGCTAGGTTCCCCGTTGTACCTGCTGAGTGTGTTCATCACCCTCACCATTCAAGAGAAACCAACTACCATTAA 891 0.5039 MSKVLGVFVGLLLVGLAASAKFDELFQPSWAMDHFIHEGELLKLKLDNYSGAGFGSKSKYMFGKVTILLKLVEGDSAGTVTAFYMSSDGPTHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHTYSIFWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVATYKDFQIDACECPVPVTSADSAKKCSSSEDNKYWWDQPTLSELNLHQSHQLMWVRANHMLYDYCADTARFPVVPAECVHHPHHSRETNYH* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1667 296 PIRSF EndGlu_transf 1 288 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso12g1667 296 CDD GH16_XET 17 283 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso12g1667 296 Pfam Glycosyl hydrolases family 16 25 200 IPR000757 GO:0004553|GO:0005975
Gso12g1667 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 208 IPR000757 GO:0004553|GO:0005975
Gso12g1667 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 283 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gso12g1667 296 Gene3D - 13 288 - -
Gso12g1667 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 14 287 - -
Gso12g1667 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 14 287 IPR044791 GO:0004553
Gso12g1667 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 287 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1667 Gso-Chr12 40270092 40272567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1667 52 288 Glycoside Hydrolase AT4G03210 78.481 2.31e-142 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1667 K08235 - gmx:100527891 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1667 12 40270092 40272567 Gso11g3195 11 47749545 47751740 GST
Gso12g0836 12 9032831 9035281 Gso12g1667 12 40270092 40272567 PCT
Gso6g2484 6 46602653 46605261 Gso12g1667 12 40270092 40272567 PCT