LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g0836	ATGTCTGGGTCCTTGGGATTCTTCTTTGGGGGTCTTACGTTGTTGTTGTTGGTCGGGGTGGCTAATGCTGTGGCCAACACTTCCAACAAATTTGATCAACTCTTCCAACCAAGCTGGGCTTTTGACCACTTCATTCATGAAGGGGATCTCCTCAAACTCAAACTAGACAATTTTTCCGGCGCTGGTTTTACTTCCAAGAGCAAGTATATGTTTGGGAAAGTCACCATCCAGCTTAAGCTTGTGGAAGGTGACTCTGCTGGAACAGTCACTGCTTTCTATATGTCATCGGACGGTCCAAACCACAACGAGTTTGATTTTGAGTTTCTAGGCAACACCACGGGGGAACCATACTCTGTCCAAACCAATGTGTATGTAAACGGAGTGGGCAACAGGGAGCAAAGGCTCAACCTTTGGTTCGACCCCACCAAGGATTTTCACTCATACTCTATCTTCTGGAATCAACGTCAAGTTGTATTTTTGGTGGATGAAACGCCAATAAGGGTGCACACGAACATGGAGCACAAGGGAATTCCATTTCCTAAGGACCAACCCATGGGTGTGTACAGTTCATTATGGAATGCTGATGATTGGGCCACGCAGGGTGGTCGTGTGAAAACAGATTGGAGCCACGCACCCTTCATTGCCACATACAAGAACTTCGAGATAAATGCGTGTGAGTGTCCCGTGTCAGTGGCTGCAATGGATAATGCTAAGAAGTGCACCAGCAGTGAGGGGAATAAGTATTGGTGGGATGAGCCTAATTTGGCTGAACTCAACTTGCACCAGAGCCACCAGCTTATGTGGGTTAGGGCAAGGCACATTTTCTATGACTATTGCACTGACACTGCTAGGTTCCCAGTCACGCCTGCTGAGTGTGTCCATCACCGTCACACCTGA	897	0.4771	MSGSLGFFFGGLTLLLLVGVANAVANTSNKFDQLFQPSWAFDHFIHEGDLLKLKLDNFSGAGFTSKSKYMFGKVTIQLKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYSVQTNVYVNGVGNREQRLNLWFDPTKDFHSYSIFWNQRQVVFLVDETPIRVHTNMEHKGIPFPKDQPMGVYSSLWNADDWATQGGRVKTDWSHAPFIATYKNFEINACECPVSVAAMDNAKKCTSSEGNKYWWDEPNLAELNLHQSHQLMWVRARHIFYDYCTDTARFPVTPAECVHHRHT*	299

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso12g0836	298	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	296	IPR013320	-
	Gso12g0836	298	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	22	217	IPR000757	GO:0004553\|GO:0005975
	Gso12g0836	298	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	245	292	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Gso12g0836	298	Gene3D	-	17	298	-	-
	Gso12g0836	298	CDD	GH16_XET	27	292	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Gso12g0836	298	PIRSF	EndGlu_transf	6	297	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Gso12g0836	298	Pfam	Glycosyl hydrolases family 16	34	209	IPR000757	GO:0004553\|GO:0005975
	Gso12g0836	298	PRINTS	Glycosyl hydrolase family 16 signature	61	79	IPR008264	GO:0004553\|GO:0005975
	Gso12g0836	298	PRINTS	Glycosyl hydrolase family 16 signature	119	132	IPR008264	GO:0004553\|GO:0005975
	Gso12g0836	298	PRINTS	Glycosyl hydrolase family 16 signature	137	154	IPR008264	GO:0004553\|GO:0005975
	Gso12g0836	298	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	14	296	IPR044791	GO:0004553
	Gso12g0836	298	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	14	296	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g0836	Gso-Chr12	9032831	9035281	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g0836	61	297	Glycoside Hydrolase	AT4G03210	74.684	1.33e-139	392

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g0836	K08235		-	gmx:100785982	608.986

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso12g0836	12	9032831	9035281	Gso6g2484	6	46602653	46605261	GST
	Gso12g0836	12	9032831	9035281	Gso12g1667	12	40270092	40272567	PCT
	Gso12g0836	12	9032831	9035281	Gso11g3195	11	47749545	47751740	PCT