Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2458 ATGGCCACTGTTACTTCTTCTTTCTCTTTCTCCACTCTCACTCAATCTTCTTCGCCGAGGAACCTCTCCACACTCTCTTCCAATTCACCAACTTTTCGCATCCGCGTTGGTTTCTCCTGTCACTATGTTGGAGTTCGAGCTTCCAATTCCGCTTCCAAAATAGTCGTTCGATGCTCCTCTGCCGTCGCAGAACCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAAGCGGCCAATTCCTAGTATCTACAACACCGTGCTGCAGGAGCTCATTGTCCAGCAACATTTAATGAGATACAAGAGATCGTATCGCTATGACGCCGTATTTGCCCTTGGCTTTGTCACTGTATATGAGCAACTCATGGAAGGGTATCCAAGTGATGAGGACCGAGATGCCATCTTCCAAGCATACATTCAGGCATTGAAAGAAGATCCTGAACAATACAGAGTAGATGCAAAGAAATTGGAAGAGTGGGCTCGGGCCCAAAACCCCACTTCACTAGTAGATTTTTCATCTAGAGAAGGAGAAGTTGAGGGTATATTAAAGGATATCGCAGAAAGAGCAGGAGGAAAGGGGGATTTCAGTTATAGTCGTTTCTTTGCAATAGGCCTCTTTCGTCTTCTTGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTCTGTGCAGTTTTGAATGTCGACAAAAGAAGTGTGGATCGGGACTTGGATGTCTATCGTAACTTGCTTTCTAAGTTGGTCCAAGCTAAAGAGCTTCTAAAGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCTGAACCACAAAAGTCTAATGAGGCCATTACACAACAACAGCAATTTTCTAGCCTTTAG 876 0.4349 MATVTSSFSFSTLTQSSSPRNLSTLSSNSPTFRIRVGFSCHYVGVRASNSASKIVVRCSSAVAEPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARAQNPTSLVDFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVDKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKSNEAITQQQQFSSL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2458 291 Coils Coil 244 274 - -
Gso6g2458 291 MobiDBLite consensus disorder prediction 265 291 - -
Gso6g2458 291 Hamap Protein Thf1 [thf1]. 62 270 IPR017499 GO:0010207|GO:0015979
Gso6g2458 291 MobiDBLite consensus disorder prediction 1 26 - -
Gso6g2458 291 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 283 - -
Gso6g2458 291 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 63 269 IPR017499 GO:0010207|GO:0015979
Gso6g2458 291 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 283 IPR017499 GO:0010207|GO:0015979
Gso6g2458 291 Pfam Thylakoid formation protein 67 272 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2458 Gso-Chr6 46239536 46243559 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2458 - - gmx:100779964 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0874 12 9758233 9761963 Gso6g2458 6 46239536 46243559 GST
Gso12g1696 12 40584318 40587956 Gso6g2458 6 46239536 46243559 PCT
Gso11g3173 11 47526687 47530473 Gso6g2458 6 46239536 46243559 PCT
Gso6g2458 6 46239536 46243559 Gso12g1696 12 40584318 40587956 PCT
Gso6g2458 6 46239536 46243559 Gso11g3173 11 47526687 47530473 PCT