Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0874 ATGGCTACTGTTATTTCTTCTTTCTCTTTCTCCACTCTCACTCAATCTTCTTCGCAGAGGAACCTCACCACACTCTCTTCCAATTCACCAACCTTTCGCTTCCGCGTTGGTTTCTCCTGCCTCAATGTTGGAGTTCGAGCTTCCAATTCCGCTTCCAAAATGGTCGTTCGTTGCTCCTCTTCCGTCGCAGAACCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAAGCGACCAATTCCTAGTATCTACAACACCGTGCTGCAGGAGCTCATTGTCCAGCAACATTTAATGAGATACAAGAGATCGTATCGCTATGACGCTGTATTTGCCCTTGGCTTCGTCACTGTATATGAGCAACTCATGGAAGGGTATCCAAGTGATGAGGACCGAGATGCCATCTTCCAAGCATACATTCAGGCATTGAAAGAAGATCCTGAACAATACAGAGTAGATGCAAAGAAATTAGAAGAGTGGGCTCGGTCTCAAAACCCAAATTCGCTATTAGAATTTTCATCTAGAGAAGGAGAAGTTGAGGGTATATTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGACTTCAGTTATAGCCGTTTCTTTGCAATAGGCCTCTTTCGTCTTCTTGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTCTGTGCGGTTTTGAATGTCAACAAAAGAAGTGTGGATCGGGACTTGGATGTGTATCGTAACTTGCTTTCCAAATTGGTTCAAGCTAAAGAGCTTCTAAAGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCTGAACCACAAAAGTCTAATGAGGCCATTACACAACAACAACAGTTTTCTAGCCTTTAG 876 0.4269 MATVISSFSFSTLTQSSSQRNLTTLSSNSPTFRFRVGFSCLNVGVRASNSASKMVVRCSSSVAEPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARSQNPNSLLEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKSNEAITQQQQFSSL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0874 291 Coils Coil 244 274 - -
Gso12g0874 291 MobiDBLite consensus disorder prediction 265 291 - -
Gso12g0874 291 Pfam Thylakoid formation protein 67 272 IPR017499 GO:0010207|GO:0015979
Gso12g0874 291 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 4 283 IPR017499 GO:0010207|GO:0015979
Gso12g0874 291 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 63 269 IPR017499 GO:0010207|GO:0015979
Gso12g0874 291 Hamap Protein Thf1 [thf1]. 62 270 IPR017499 GO:0010207|GO:0015979
Gso12g0874 291 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 4 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0874 Gso-Chr12 9758233 9761963 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0874 - - gmx:100792508 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0874 12 9758233 9761963 Gso12g0874 12 9758233 9761963 ECH
Gso12g0874 12 9758233 9761963 Gso6g2458 6 46239536 46243559 GST
Gso12g1696 12 40584318 40587956 Gso12g0874 12 9758233 9761963 PCT
Gso11g3173 11 47526687 47530473 Gso12g0874 12 9758233 9761963 PCT
Gso12g0874 12 9758233 9761963 Gso12g1696 12 40584318 40587956 PCT
Gso12g0874 12 9758233 9761963 Gso11g3173 11 47526687 47530473 PCT