Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1696 ATGGCTGCTCTCACTTCTCTATCTTTCTCAGCAGTGACTCATTGCTCAGAAAGAAAAGTGACCCTTTCCTCCACTCGCTTTCTGGCTTCCTCCTCAGAGATATTTGGGTTCCGAACCGATTTCTCGTACCACTATGTTGGTGTTCGAGCTTCCAATTCCCCATCTAAAATGGTTGTTCAATGCATGTCTTCTGCTACAGATGTTCCTCCCACTGTTTCTGAGACAAAGTTAAATTTCCTCAAGGCATATAAGCGACCAATCCCTAGTATTTACAACACTGTGCTGCAGGAGCTAATAGTGCAGCAACATTTAATGAAATACAAGAGATCATACCGCTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTATATATGATAAACTTATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCCATCTTCCAAGCCTACATTAAGGCATTGAAGGAAGATCCAGAACAATACAGAATAGACGCACGAAAGTTGGAAGAGTGGGCTCGAGTTCAAAAGCCAACTTCCCTTGTTGAGTTTTCATCCAAAGAAGGAGAAGTTGAGGGAATTTTAAAGGACATTGCAGAAAGAGCTGGAGGAAAAGGAGAATTCAGTTATAGTCGTTTTTTTGCAGTTGGACTGTTTCGTCTTCTGGAGTTGGCAAATGCCACGGAACCAACGATTTTGGACAAGCTTTGTGTGGCTTTGAACATCAACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGCATCCTGCTTTCAAAGTTGGTTCAAGCAAAAGAGCTGCTGAAGGAGTATATTGACAGGGAGAAAAAGAAAAGGGATGAAAGGGCTGAACCACAAAAGGCTAATGAGGCCATCACAACATGTTTGGGACAACAATTGCCTGGTCTGTAG 894 0.4295 MAALTSLSFSAVTHCSERKVTLSSTRFLASSSEIFGFRTDFSYHYVGVRASNSPSKMVVQCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFALGFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQKPTSLVEFSSKEGEVEGILKDIAERAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCVALNINKRSVDRDLDVYRILLSKLVQAKELLKEYIDREKKKRDERAEPQKANEAITTCLGQQLPGL* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1696 297 Coils Coil 255 275 - -
Gso12g1696 297 Hamap Protein Thf1 [thf1]. 66 274 IPR017499 GO:0010207|GO:0015979
Gso12g1696 297 Pfam Thylakoid formation protein 71 276 IPR017499 GO:0010207|GO:0015979
Gso12g1696 297 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 288 IPR017499 GO:0010207|GO:0015979
Gso12g1696 297 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 70 273 IPR017499 GO:0010207|GO:0015979
Gso12g1696 297 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1696 Gso-Chr12 40584318 40587956 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1696 - - gmx:100814341 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1696 12 40584318 40587956 Gso11g3173 11 47526687 47530473 GST
Gso12g1696 12 40584318 40587956 Gso12g0874 12 9758233 9761963 PCT
Gso12g1696 12 40584318 40587956 Gso6g2458 6 46239536 46243559 PCT
Gso12g0874 12 9758233 9761963 Gso12g1696 12 40584318 40587956 PCT
Gso6g2458 6 46239536 46243559 Gso12g1696 12 40584318 40587956 PCT