Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1832 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAAAGGGATGCATGCCAAAGTTGTGCATACCCTAAATTTGGAGGCCCTGACCCAACAACTTACAGATACAACTCGACTGAAACCTTGGCAGGGGACTGGTATTGCACTGCCATGAACTGTGGAGCTCACAACTTTGCCAGCAGATCAAGCTGCTTTAGATGTGGTGCATTGAAAGATGGTTACTCTTGTAGATTTGGGGGAAACATGGATGGCTCTGGAGGATATGGTTCTGATTGCAATTACCCTCCAGGGTGGAAAACTGGTGACTGGATTTGCACTAGAATTGGCTGTGGAGTGCATAACTATGCCAACAGGACAGAATGCTTCAAGTGCAAAACACCAAGAAATTTTGGTGACGCAGACTAA 423 0.461 MSWSGGDWMCGACQHINFKKRDACQSCAYPKFGGPDPTTYRYNSTETLAGDWYCTAMNCGAHNFASRSSCFRCGALKDGYSCRFGGNMDGSGGYGSDCNYPPGWKTGDWICTRIGCGVHNYANRTECFKCKTPRNFGDAD* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1832 140 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
Gso6g1832 140 SUPERFAMILY Ran binding protein zinc finger-like 101 136 IPR036443 -
Gso6g1832 140 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Gso6g1832 140 PANTHER ZINC FINGER PROTEIN 1 137 - -
Gso6g1832 140 SUPERFAMILY Ran binding protein zinc finger-like 3 33 IPR036443 -
Gso6g1832 140 Gene3D - 98 136 - -
Gso6g1832 140 Gene3D - 1 35 - -
Gso6g1832 140 Gene3D - 42 79 - -
Gso6g1832 140 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Gso6g1832 140 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Gso6g1832 140 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Gso6g1832 140 Pfam Zn-finger in Ran binding protein and others 105 134 IPR001876 -
Gso6g1832 140 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Gso6g1832 140 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Gso6g1832 140 SMART zf_4 6 30 IPR001876 -
Gso6g1832 140 SMART zf_4 107 133 IPR001876 -
Gso6g1832 140 SMART zf_4 50 76 IPR001876 -
Gso6g1832 140 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 137 - -
Gso6g1832 140 SUPERFAMILY Ran binding protein zinc finger-like 47 79 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1832 Gso-Chr6 22682585 22684658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1832 - - gmx:100792208 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0987 17 9241821 9243789 Gso6g1832 6 22682585 22684658 PCT
Gso6g1832 6 22682585 22684658 Gso17g0986 17 9232596 9234689 PCT