Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1555 ATGGCTTCCGCAACTGCCCCAAGATTCATCAAGTGCGTGACCGTTGGTGATGGAGCTGTAGGGAAGACCTGCATGCTCATTTGCTATACCAGCAACAAATTCCCCACGGACTATATCCCCACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCATAACTGTCAACTTAGGCCTTTGGGATACAGCTGGGCAAGAGGATTACAACAGGCTGAGGCCCTTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGTCGCGCGAGCTATGAGAATGTGCTGAAGAAGTGGATCCCTGAACTCCAGCATTTTGCCCCTGGCATCCCGTTGGTGTTAGTTGGCACCAAATTGGATCTACGAGAAGACAAGCACTACATGGCTGATCATCCCAGCTTGGTGCCAGTGACTACTGATCAAGGTGAGGAACTCCGTAAACACATTGGAGCTACCTACTATATTGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGGCAGTTTTTGATGCTGCTATTAGAATGGTCATCAAGCCTCCACAAAAGCAAAACGAGAAAAGAAAGAAAAAACCACGTGGCTGTTTCCTAAACGTCCTCTGTCGAAGGAACATTGTTCGCCTTAAATGA 639 0.4679 MASATAPRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPLVLVGTKLDLREDKHYMADHPSLVPVTTDQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIRMVIKPPQKQNEKRKKKPRGCFLNVLCRRNIVRLK* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1555 212 Gene3D - 3 201 IPR027417 -
Gso6g1555 212 SMART ras_sub_4 7 183 - -
Gso6g1555 212 SMART rab_sub_5 10 183 - -
Gso6g1555 212 ProSiteProfiles small GTPase Ras family profile. 5 203 IPR001806 GO:0003924|GO:0005525
Gso6g1555 212 ProSiteProfiles small GTPase Rab1 family profile. 3 212 - -
Gso6g1555 212 PRINTS Transforming protein P21 ras signature 10 31 - -
Gso6g1555 212 PRINTS Transforming protein P21 ras signature 33 49 - -
Gso6g1555 212 PRINTS Transforming protein P21 ras signature 50 72 - -
Gso6g1555 212 PRINTS Transforming protein P21 ras signature 112 125 - -
Gso6g1555 212 PRINTS Transforming protein P21 ras signature 158 180 - -
Gso6g1555 212 ProSiteProfiles small GTPase Rho family profile. 3 180 - -
Gso6g1555 212 PANTHER RHO FAMILY GTPASE 1 205 IPR003578 GO:0005525|GO:0007264
Gso6g1555 212 SMART rho_sub_3 12 183 IPR001806 GO:0003924|GO:0005525
Gso6g1555 212 Pfam Ras family 11 181 IPR001806 GO:0003924|GO:0005525
Gso6g1555 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 180 IPR027417 -
Gso6g1555 212 CDD Rop_like 9 181 - -
Gso6g1555 212 PANTHER - 1 205 - -
Gso6g1555 212 TIGRFAM small_GTP: small GTP-binding protein domain 10 174 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1555 Gso-Chr6 16016814 16021150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1555 6 196 EF-hand Containing Proteins AT5G27540 24.742 2.27e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1555 K04392 - gmx:100527158 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1555 6 16016814 16021150 Gso6g1555 6 16016814 16021150 ECH
Gso4g1512 4 44023477 44027850 Gso6g1555 6 16016814 16021150 GST
Gso5g0292 5 3059724 3063769 Gso6g1555 6 16016814 16021150 PCT
Gso17g0776 17 7182664 7186552 Gso6g1555 6 16016814 16021150 PCT
Gso6g1555 6 16016814 16021150 Gso5g0292 5 3059724 3063769 PCT
Gso6g1555 6 16016814 16021150 Gso17g0776 17 7182664 7186552 PCT