LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g0776	ATGAGTGAGAATCATGTGAAGTGCCGCCGCGTACACACACATACACATTCACTCTCTCTCTCTCTTAACTTGTCTGTTAAATTCAACAAAAACACACCCTTTGTGAGAACTTGTTGTTGTTGTTGTTGTTCAATGGCTGCAACAGCTTCAAGGTTCATCAAGTGTGTGACAGTCGGGGATGGAGCTGTAGGCAAAACTTGCATGCTCATTTGCTATACAAGCAACAAATTCCCCACGGACTATATTCCAACGGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAAACACAACTGTCAATTTAGGCCTCTGGGACACTGCTGGGCAAGAGGATTACAACAGGCTGAGGCCATTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTTAGCCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCTGGTGTCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTTCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGTCTGGCGCCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTGGTCGGAGCTACGTATTATATAGAGTGCAGCTCAAAGACTCAGCAGAATGTGAAGTCAGTTTTTGATGCTGCTATCAAGGTGGTCATCGAGCCTCCACAAAAACATGAGAAGAAGAAAAAACCACGTCGAGGGTGTCTACTAAATGTCATCTGTGGAAGGAATATAGTTCGTTTCAAATGA	765	0.4471	MSENHVKCRRVHTHTHSLSLSLNLSVKFNKNTPFVRTCCCCCCSMAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVENTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLAPVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIEPPQKHEKKKKPRRGCLLNVICGRNIVRFK*	255

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso17g0776	254	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	52	223	IPR027417	-
	Gso17g0776	254	PANTHER	RAC-LIKE GTP-BINDING PROTEIN ARAC10-RELATED	45	245	-	-
	Gso17g0776	254	Pfam	Ras family	54	223	IPR001806	GO:0003924\|GO:0005525
	Gso17g0776	254	SMART	rab_sub_5	53	226	-	-
	Gso17g0776	254	ProSiteProfiles	small GTPase Ras family profile.	48	242	IPR001806	GO:0003924\|GO:0005525
	Gso17g0776	254	Gene3D	-	44	243	IPR027417	-
	Gso17g0776	254	TIGRFAM	small_GTP: small GTP-binding protein domain	53	217	IPR005225	GO:0005525
	Gso17g0776	254	CDD	Rop_like	52	224	-	-
	Gso17g0776	254	ProSiteProfiles	small GTPase Rab1 family profile.	48	254	-	-
	Gso17g0776	254	PRINTS	Transforming protein P21 ras signature	53	74	-	-
	Gso17g0776	254	PRINTS	Transforming protein P21 ras signature	76	92	-	-
	Gso17g0776	254	PRINTS	Transforming protein P21 ras signature	93	115	-	-
	Gso17g0776	254	PRINTS	Transforming protein P21 ras signature	155	168	-	-
	Gso17g0776	254	PRINTS	Transforming protein P21 ras signature	201	223	-	-
	Gso17g0776	254	PANTHER	RHO FAMILY GTPASE	45	245	IPR003578	GO:0005525\|GO:0007264
	Gso17g0776	254	SMART	rho_sub_3	55	226	IPR001806	GO:0003924\|GO:0005525
	Gso17g0776	254	ProSiteProfiles	small GTPase Rho family profile.	46	223	-	-
	Gso17g0776	254	SMART	ras_sub_4	50	226	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g0776	Gso-Chr17	7182664	7186552	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso17g0776	53	226	EF-hand Containing Proteins	AT5G27540	24.138	1.21e-14	71.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso17g0776	K04392		-	gmx:100806681	407.527

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso5g0292	5	3059724	3063769	Gso17g0776	17	7182664	7186552	GST
	Gso17g0776	17	7182664	7186552	Gso4g1512	4	44023477	44027850	PCT
	Gso17g0776	17	7182664	7186552	Gso6g1555	6	16016814	16021150	PCT
	Gso4g1512	4	44023477	44027850	Gso17g0776	17	7182664	7186552	PCT
	Gso6g1555	6	16016814	16021150	Gso17g0776	17	7182664	7186552	PCT