LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso5g0292	ATGGCTGCAACAGCTTCAAGGTTTATCAAGTGTGTGACAGTTGGGGATGGAGCTGTAGGCAAAACTTGCATGCTCATTTGCTATACTAGCAACAAATTCCCCACGGACTATATTCCAACGGTGTTTGATAATTTCAGTGCAAATGTAGTTGTGGAAGGCACAACTGTCAATTTAGGCCTCTGGGACACTGCTGGACAAGAGGATTACAACAGACTGAGGCCTTTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTCAGTCATGCAAGCTATGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCCGGCATTCCAGTGGTGCTAGTTGGCACCAAATTGGATCTCCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGTCTGGTGCCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTGGTGGGAGCTACATATTATATAGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGTCAGTTTTTGATGCTGCTATAAAGGTGGTCATTAAGCCTCCACAAAAACAAGAGAAGAAAAAACCACGTCGAGGGTGTCTACTAAATGTCATCTGTGGAAGGAATATAGTTCGTTTTAAATGA	630	0.4429	MAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPGIPVVLVGTKLDLREDKHYLADHPGLVPVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIKPPQKQEKKKPRRGCLLNVICGRNIVRFK*	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso5g0292	209	Pfam	Ras family	10	179	IPR001806	GO:0003924\|GO:0005525
	Gso5g0292	209	SMART	rab_sub_5	9	182	-	-
	Gso5g0292	209	PRINTS	Transforming protein P21 ras signature	9	30	-	-
	Gso5g0292	209	PRINTS	Transforming protein P21 ras signature	32	48	-	-
	Gso5g0292	209	PRINTS	Transforming protein P21 ras signature	49	71	-	-
	Gso5g0292	209	PRINTS	Transforming protein P21 ras signature	111	124	-	-
	Gso5g0292	209	PRINTS	Transforming protein P21 ras signature	157	179	-	-
	Gso5g0292	209	ProSiteProfiles	small GTPase Rab1 family profile.	4	209	-	-
	Gso5g0292	209	TIGRFAM	small_GTP: small GTP-binding protein domain	9	173	IPR005225	GO:0005525
	Gso5g0292	209	ProSiteProfiles	small GTPase Rho family profile.	2	179	-	-
	Gso5g0292	209	SMART	ras_sub_4	6	182	-	-
	Gso5g0292	209	CDD	Rop_like	8	180	-	-
	Gso5g0292	209	SMART	rho_sub_3	11	182	IPR001806	GO:0003924\|GO:0005525
	Gso5g0292	209	PANTHER	RHO FAMILY GTPASE	1	202	IPR003578	GO:0005525\|GO:0007264
	Gso5g0292	209	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	8	179	IPR027417	-
	Gso5g0292	209	ProSiteProfiles	small GTPase Ras family profile.	4	197	IPR001806	GO:0003924\|GO:0005525
	Gso5g0292	209	Gene3D	-	2	198	IPR027417	-
	Gso5g0292	209	PANTHER	GTPASE, PUTATIVE-RELATED	1	202	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso5g0292	Gso-Chr5	3059724	3063769	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso5g0292	9	192	EF-hand Containing Proteins	AT5G27540	24.339	2.61e-15	72.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso5g0292	K04392		-	gmx:100806681	409.453

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso5g0292	5	3059724	3063769	Gso17g0776	17	7182664	7186552	GST
	Gso5g0292	5	3059724	3063769	Gso4g1512	4	44023477	44027850	PCT
	Gso5g0292	5	3059724	3063769	Gso6g1555	6	16016814	16021150	PCT
	Gso4g1512	4	44023477	44027850	Gso5g0292	5	3059724	3063769	PCT
	Gso6g1555	6	16016814	16021150	Gso5g0292	5	3059724	3063769	PCT