Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1349 ATGGCGGCTGAGCTAGTCAATGGTGCAACAAGCGAGAAGCTGGCTGAAACTGATTGGACAAAAAATATTGAAATTTGTGAGCTAGTTGCTCATGATAAAAGGGAAGCAAGAGATGTTGTTAAAGCTATAAAAAAGAGACTAGGAAGCAAACACTCCAATACTCAACTCTTTGCTGTCATGTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATACTGGAATTATTCCTATTCTAGTAAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAATCCTAGTTCACAACCTAGTAGGACTAGTAATGTACCAAACAGAGAGCAAGCCTCACCTAAACATGAAGCAGTTGCTCAGCCAGCAGAGTCCCAGACTGTCCCTGAATCTAGCATTATTCAAAAGGCTGGCAATGCATTAGAAGTACTAAAAGAGGTCCTTGATGTTGTTGATGCTCAAAATCCTCAGGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACTGCCAGTCGATTTGACCATGAAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGATTACGCAAGGGAAAGGCTTGTGCAAGGCCTGAACACGAGGAGACTGAAACTGACATCCCTTGCTTGGGTTTGCTTGGAGAGAGACTCAATCGTCCTCTAATACGACCACTCTCGATAGAACCTCCAACTCGAGAAGCTGATACTCGATCTCCACCTGTTGTGATCCCACCATCTCGAGAAGCTGATACCCGATCTCCACCTGCTGTGATTCCACCTCCACGGCCAAAACAGAATGGGCAGGTTCCTCACCCTGTAGCAATTCCACCACCACCTGCAAAACACATTGAGAGGGAGAGGTTTTTTCTGGAAAACAAGGATGGTTCTAATTTGTCTGGCCACATGAGGGGCCTCTCTTTACATAGTCGTAACGGCAGCAGCTCTCGCAGTGGAAGCTTTGATTTTAGTGACTGA 1290 0.4419 MAAELVNGATSEKLAETDWTKNIEICELVAHDKREARDVVKAIKKRLGSKHSNTQLFAVMLLEMLMNNIGEHIHEQVIDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFAQRDQVVQSNNPSSQPSRTSNVPNREQASPKHEAVAQPAESQTVPESSIIQKAGNALEVLKEVLDVVDAQNPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDDLLAGRATTTASRFDHEEAEEEEEPEQLVRRLRKGKACARPEHEETETDIPCLGLLGERLNRPLIRPLSIEPPTREADTRSPPVVIPPSREADTRSPPAVIPPPRPKQNGQVPHPVAIPPPPAKHIERERFFLENKDGSNLSGHMRGLSLHSRNGSSSRSGSFDFSD* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1349 429 Gene3D - 2 136 IPR008942 -
Gso6g1349 429 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Gso6g1349 429 MobiDBLite consensus disorder prediction 142 164 - -
Gso6g1349 429 SUPERFAMILY ENTH/VHS domain 4 137 IPR008942 -
Gso6g1349 429 PANTHER TOM1-LIKE PROTEIN 1 429 IPR044836 GO:0035091|GO:0043130|GO:0043328
Gso6g1349 429 MobiDBLite consensus disorder prediction 272 312 - -
Gso6g1349 429 SUPERFAMILY GAT-like domain 143 267 - -
Gso6g1349 429 MobiDBLite consensus disorder prediction 407 429 - -
Gso6g1349 429 MobiDBLite consensus disorder prediction 329 384 - -
Gso6g1349 429 MobiDBLite consensus disorder prediction 287 311 - -
Gso6g1349 429 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Gso6g1349 429 CDD VHS 2 130 - -
Gso6g1349 429 Gene3D - 176 275 IPR038425 -
Gso6g1349 429 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Gso6g1349 429 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 429 - -
Gso6g1349 429 MobiDBLite consensus disorder prediction 396 429 - -
Gso6g1349 429 MobiDBLite consensus disorder prediction 142 183 - -
Gso6g1349 429 Pfam VHS domain 5 111 IPR002014 GO:0035091|GO:0043130
Gso6g1349 429 MobiDBLite consensus disorder prediction 359 384 - -
Gso6g1349 429 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1349 Gso-Chr6 13263162 13269869 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1349 - - gmx:100785131 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1679 5 40075947 40081781 Gso6g1349 6 13263162 13269869 PCT
Gso8g0041 8 386262 392097 Gso6g1349 6 13263162 13269869 PCT
Gso6g1349 6 13263162 13269869 Gso5g1679 5 40075947 40081781 PCT
Gso6g1349 6 13263162 13269869 Gso8g0041 8 386262 392097 PCT